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C9RJ50

- C9RJ50_FIBSS

UniProt

C9RJ50 - C9RJ50_FIBSS

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Protein

Superoxide dismutase

Gene

sodB

Organism
Fibrobacter succinogenes (strain ATCC 19169 / S85)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:Fisuc_0079Imported, FSU_0477Imported
OrganismiFibrobacter succinogenes (strain ATCC 19169 / S85)Imported
Taxonomic identifieri59374 [NCBI]
Taxonomic lineageiBacteriaFibrobacteresFibrobacteralesFibrobacteraceaeFibrobacter
ProteomesiUP000000517: Chromosome, UP000001497: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi59374.Fisuc_0079.

Structurei

3D structure databases

ProteinModelPortaliC9RJ50.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013584.
KOiK04564.
OMAiHANRELQ.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9RJ50-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFEPVNGKFE MPVLPYGMAD LAPALSQETM LFHFGKHLQT YVNNLNAALP
60 70 80 90 100
GSAFEGKSLE EIVKTSEGGV FNNAGQILNH AMYFLQFKAP TMSNVPTGEI
110 120 130 140 150
AKLIERDFGS FEKFQEDFQT KGAGLFGSGW VWLSALDTGK LVITQEGNAQ
160 170 180 190
NPITKGLKPL LTFDVWEHAY YIDYRNRRPD YLKSLWSIVN WDVVNERLG
Length:199
Mass (Da):22,390
Last modified:November 24, 2009 - v1
Checksum:i1DE20ED468193497
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001792 Genomic DNA. Translation: ACX73694.1.
CP002158 Genomic DNA. Translation: ADL25322.1.
RefSeqiWP_012819924.1. NC_017448.1.
YP_003248176.1. NC_013410.1.
YP_005820603.1. NC_017448.1.

Genome annotation databases

EnsemblBacteriaiACX73694; ACX73694; Fisuc_0079.
ADL25322; ADL25322; FSU_0477.
GeneIDi12432110.
8520662.
KEGGifsc:FSU_0477.
fsu:Fisuc_0079.
PATRICi32139941. VBIFibSuc28982_0078.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001792 Genomic DNA. Translation: ACX73694.1 .
CP002158 Genomic DNA. Translation: ADL25322.1 .
RefSeqi WP_012819924.1. NC_017448.1.
YP_003248176.1. NC_013410.1.
YP_005820603.1. NC_017448.1.

3D structure databases

ProteinModelPortali C9RJ50.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 59374.Fisuc_0079.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACX73694 ; ACX73694 ; Fisuc_0079 .
ADL25322 ; ADL25322 ; FSU_0477 .
GeneIDi 12432110.
8520662.
KEGGi fsc:FSU_0477.
fsu:Fisuc_0079.
PATRICi 32139941. VBIFibSuc28982_0078.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013584.
KOi K04564.
OMAi HANRELQ.
OrthoDBi EOG63NMNT.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Weimer P.J.
    , Stevenson D.M., Boyum J., Brumm P.I., Mead D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19169 / S85Imported and S85Imported.
  2. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
    Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19169 / S85Imported.
  3. Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: S85Imported.

Entry informationi

Entry nameiC9RJ50_FIBSS
AccessioniPrimary (citable) accession number: C9RJ50
Entry historyi
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: November 26, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3