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C9RJ50

- C9RJ50_FIBSS

UniProt

C9RJ50 - C9RJ50_FIBSS

Protein

Superoxide dismutase

Gene

sodB

Organism
Fibrobacter succinogenes (strain ATCC 19169 / S85)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (24 Nov 2009)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotationImported

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodBImported
    Ordered Locus Names:Fisuc_0079Imported, FSU_0477Imported
    OrganismiFibrobacter succinogenes (strain ATCC 19169 / S85)Imported
    Taxonomic identifieri59374 [NCBI]
    Taxonomic lineageiBacteriaFibrobacteresFibrobacteralesFibrobacteraceaeFibrobacter
    ProteomesiUP000000517: Chromosome, UP000001497: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi59374.Fisuc_0079.

    Structurei

    3D structure databases

    ProteinModelPortaliC9RJ50.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0605.
    HOGENOMiHOG000013584.
    KOiK04564.
    OMAiHANRELQ.
    OrthoDBiEOG63NMNT.

    Family and domain databases

    InterProiIPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view]
    PANTHERiPTHR11404. PTHR11404. 1 hit.
    PfamiPF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000349. SODismutase. 1 hit.
    PRINTSiPR01703. MNSODISMTASE.
    SUPFAMiSSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEiPS00088. SOD_MN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C9RJ50-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFEPVNGKFE MPVLPYGMAD LAPALSQETM LFHFGKHLQT YVNNLNAALP    50
    GSAFEGKSLE EIVKTSEGGV FNNAGQILNH AMYFLQFKAP TMSNVPTGEI 100
    AKLIERDFGS FEKFQEDFQT KGAGLFGSGW VWLSALDTGK LVITQEGNAQ 150
    NPITKGLKPL LTFDVWEHAY YIDYRNRRPD YLKSLWSIVN WDVVNERLG 199
    Length:199
    Mass (Da):22,390
    Last modified:November 24, 2009 - v1
    Checksum:i1DE20ED468193497
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001792 Genomic DNA. Translation: ACX73694.1.
    CP002158 Genomic DNA. Translation: ADL25322.1.
    RefSeqiYP_003248176.1. NC_013410.1.
    YP_005820603.1. NC_017448.1.

    Genome annotation databases

    EnsemblBacteriaiACX73694; ACX73694; Fisuc_0079.
    ADL25322; ADL25322; FSU_0477.
    GeneIDi12432110.
    8520662.
    KEGGifsc:FSU_0477.
    fsu:Fisuc_0079.
    PATRICi32139941. VBIFibSuc28982_0078.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001792 Genomic DNA. Translation: ACX73694.1 .
    CP002158 Genomic DNA. Translation: ADL25322.1 .
    RefSeqi YP_003248176.1. NC_013410.1.
    YP_005820603.1. NC_017448.1.

    3D structure databases

    ProteinModelPortali C9RJ50.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 59374.Fisuc_0079.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACX73694 ; ACX73694 ; Fisuc_0079 .
    ADL25322 ; ADL25322 ; FSU_0477 .
    GeneIDi 12432110.
    8520662.
    KEGGi fsc:FSU_0477.
    fsu:Fisuc_0079.
    PATRICi 32139941. VBIFibSuc28982_0078.

    Phylogenomic databases

    eggNOGi COG0605.
    HOGENOMi HOG000013584.
    KOi K04564.
    OMAi HANRELQ.
    OrthoDBi EOG63NMNT.

    Family and domain databases

    InterProi IPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view ]
    PANTHERi PTHR11404. PTHR11404. 1 hit.
    Pfami PF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000349. SODismutase. 1 hit.
    PRINTSi PR01703. MNSODISMTASE.
    SUPFAMi SSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEi PS00088. SOD_MN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Weimer P.J.
      , Stevenson D.M., Boyum J., Brumm P.I., Mead D.
      Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19169 / S85Imported and S85Imported.
    2. "Complete sequence of Fibrobacter succinogenes subsp. succinogenes S85."
      Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
      Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19169 / S85Imported.
    3. Durkin A.S., Nelson K.E., Morrison M., Forsberg C.W., Wilson D.B., Russell J.B., Cann I.K.O., Mackie R.I., White B.A.
      Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: S85Imported.

    Entry informationi

    Entry nameiC9RJ50_FIBSS
    AccessioniPrimary (citable) accession number: C9RJ50
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 24, 2009
    Last sequence update: November 24, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3