Skip Header

Contribute Send feedback
Read comments (?) or add your own

C9R8D5 (C9R8D5_AMMDK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Cobalamin biosynthesis protein CobD HAMAP-Rule MF_00024
Gene names
Name:cobD HAMAP-Rule MF_00024
Ordered Locus Names:Adeg_1468
OrganismAmmonifex degensii (strain DSM 10501 / KC4) [Complete proteome] [HAMAP] EMBL ACX52564.1
Taxonomic identifier429009 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacteraceae › Moorella group › Ammonifex ›

Protein attributes

Sequence length318 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group By similarity. HAMAP-Rule MF_00024

Pathway

Cofactor biosynthesis; adenosylcobalamin biosynthesis. HAMAP-Rule MF_00024

Subcellular location

Cell membrane; Multi-pass membrane protein By similarity HAMAP-Rule MF_00024.

Sequence similarities

Belongs to the CobD/CbiB family. HAMAP-Rule MF_00024

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Transmembrane48 – 6821Helical; By similarity HAMAP-Rule MF_00024
Transmembrane153 – 17321Helical; By similarity HAMAP-Rule MF_00024
Transmembrane204 – 22421Helical; By similarity HAMAP-Rule MF_00024
Transmembrane298 – 31821Helical; By similarity HAMAP-Rule MF_00024

Sequences

Sequence LengthMass (Da)Tools
C9R8D5 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: 82142FA1625A1F64

FASTA31834,850
        10         20         30         40         50         60 
MRPVAIVLAV VLDLVLGDPR WLPHPVRLFG RVISLYERVL VGITRRPLIL LGGGIVLALA 

        70         80         90        100        110        120 
LPVGVWWGAC WLLDLAYSWN YWTGLVTESC LLATTVALKG LGQAALAVRD LLRTGDLPGA 

       130        140        150        160        170        180 
RREVGMIVGR DVDQLDTSGV IRAAVESVAE NTVDAVIAPL FYAFLGGAPL ALAYRAVNTL 

       190        200        210        220        230        240 
DSMVGYRRAH YRYLGWASAR LDDLLNFLPA RLAASLFILT AFLWRADVRH TWHVLCRDGR 

       250        260        270        280        290        300 
KHASPNSGLP EAAMAGLLGV RLGGPCFYGG ELHPRPYLGE ERVPLEVEHI TQAVKALYWV 

       310 
SFQGLLVGGI LYILLEWV

« Hide

References

[1]"Complete sequence of chromosome of Ammonifex degensii KC4."
US DOE Joint Genome Institute
Kerfeld C., Goodner B., Huber H., Stetter K., Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Ovchinnikova G., Richardson P.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 10501 / KC4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001785 Genomic DNA. Translation: ACX52564.1.
RefSeqYP_003239414.1. NC_013385.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING429009.Adeg_1468.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX52564; ACX52564; Adeg_1468.
GeneID8491461.
KEGGadg:Adeg_1468.
PATRIC20882508. VBIAmmDeg104956_1472.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1270.
HOGENOMHOG000290070.
KOK02227.

Enzyme and pathway databases

BioCycADEG429009:GHG1-1532-MONOMER.
UniPathwayUPA00148.

Family and domain databases

HAMAPMF_00024. CobD_CbiB.
InterProIPR004485. Cobalamin_biosynth_CobD/CbiB.
[Graphical view]
PfamPF03186. CobD_Cbib. 1 hit.
[Graphical view]
TIGRFAMsTIGR00380. cobD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC9R8D5_AMMDK
AccessionPrimary (citable) accession number: C9R8D5
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info