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C9QX50 (C9QX50_ECOD1) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

4-aminobutyrate transaminase EMBL BAJ43100.1
Gene names
Name:puuE EMBL BAJ43100.1
Ordered Locus Names:EcDH1_2344, ECDH1ME8569_1244 EMBL BAJ43100.1
OrganismEscherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) [Complete proteome] [HAMAP] EMBL ACX39987.1
Taxonomic identifier536056 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length421 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
C9QX50 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: A2C17A885FEBE4EB

FASTA42144,729
        10         20         30         40         50         60 
MSNNEFHQRR LSATPRGVGV MCNFFAQSAE NATLKDVEGN EYIDFAAGIA VLNTGHRHPD 

        70         80         90        100        110        120 
LVAAVEQQLQ QFTHTAYQIV PYESYVTLAE KINALAPVSG QAKTAFFTTG AEAVENAVKI 

       130        140        150        160        170        180 
ARAHTGRPGV IAFSGGFHGR TYMTMALTGK VAPYKIGFGP FPGSVYHVPY PSDLHGISTQ 

       190        200        210        220        230        240 
DSLDAIERLF KSDIEAKQVA AIIFEPVQGE GGFNVAPKEL VAAIRRLCDE HGIVMIADEV 

       250        260        270        280        290        300 
QSGFARTGKL FAMDHYADKP DLMTMAKSLA GGMPLSGVVG NANIMDAPAP GGLGGTYAGN 

       310        320        330        340        350        360 
PLAVAAAHAV LNIIDKESLC ERANQLGQRL KNTLIDAKES VPAIAAVRGL GSMIAVEFND 

       370        380        390        400        410        420 
PQTGEPSAAI AQKIQQRALA QGLLLLTCGA YGNVIRFLYP LTIPDAQFDA AMKILQDALS 


D 

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References

[1]"Complete sequence of Escherichia coli DH1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Keasling J.D.
Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1.
[2]"Comparison of sequence reads obtained from three next-generation sequencing platforms."
Suzuki S., Ono N., Furusawa C., Ying B.-W., Yomo T.
PLoS ONE 6:E19534-E19534(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 and DH1 EMBL BAJ43100.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001637 Genomic DNA. Translation: ACX39987.1.
AP012030 Genomic DNA. Translation: BAJ43100.1.
RefSeqYP_006092276.1. NC_017625.1.
YP_006128645.1. NC_017638.1.

3D structure databases

ProteinModelPortalC9QX50.
SMRC9QX50. Positions 2-421.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEC9QX50.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX39987; ACX39987; EcDH1_2344.
BAJ43100; BAJ43100; ECDH1ME8569_1244.
GeneID12705947.
12874118.
KEGGedh:EcDH1_2344.
edj:ECDH1ME8569_1244.
PATRIC36696998. VBIEscCol36761_2466.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000020206.
KOK00823.
OMAGQRLTNT.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR00700. GABAtrnsam. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC9QX50_ECOD1
AccessionPrimary (citable) accession number: C9QX50
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: January 22, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)