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C9QVH3

- C9QVH3_ECOD1

UniProt

C9QVH3 - C9QVH3_ECOD1

Protein
Submitted name:

Alpha amylase catalytic region

Gene

malS

Organism
Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (24 Nov 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: InterPro
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase catalytic regionImported
    Submitted name:
    Periplasmic alpha-amylaseImported
    Gene namesi
    Name:malSImported
    Ordered Locus Names:EcDH1_0139Imported, ECDH1ME8569_3452Imported
    OrganismiEscherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)Imported
    Taxonomic identifieri536056 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000002619: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1818 PotentialImportedAdd
    BLAST
    Chaini19 – 676658 PotentialImportedPRO_5000524198Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliC9QVH3.
    SMRiC9QVH3. Positions 181-670.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiGQNWHSF.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    C9QVH3-1 [UniParc]FASTAAdd to Basket

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    MKLAACFLTL LPGFAVAASW TSPGFPAFSE QGTGTFVSHA QLPKGTRPLT    50
    LNFDQQCWQP ADAIKLNQML SLQPCSNTPP QWRLFRDGEY TLQIDTRSGT 100
    PTLMISIQNA AEPVASLVRE CPKWDGLPLT VDVSATFPEG AAVRDYYSQQ 150
    IAIVKNGQIM LQPAATSNGL LLLERAETDT SAPFDWHNAT VYFVLTDRFE 200
    NGDPSNDQSY GRHKDGMAEI GTFHGGDLRG LTNKLDYLQQ LGVNALWISA 250
    PFEQIHGWVG GGTKGDFPHY AYHGYYTQDW TNLDANMGNE ADLRTLVDSA 300
    HQRGIRILFD VVMNHTGYAT LADMQEYQFG ALYLSGDEVK KSLGERWSDW 350
    KPAAGQTWHS FNDYINFSDK TGWDKWWGKN WIRTDIGDYD NPGFDDLTMS 400
    LAFLPDIKTE STTASGLPVF YKNKMDTHAK AIDGYTPRDY LTHWLSQWVR 450
    DYGIDGFRVD TAKHVELPAW QQLKTEASAA LREWKKANPD KALDDKPFWM 500
    TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAQ MDTTWQQMAE 550
    KLQGFNVLSY LSSHDTRLFR EGGDKAAELL LLAPGAVQIF YGDESSRPFG 600
    PTGSDPLQGT RSDMNWQDVS GKSAASVAHW QKISQFRARH PAIGAGKQTT 650
    LLLKQGYGFV REHGDDKVLV VWAGQQ 676
    Length:676
    Mass (Da):75,713
    Last modified:November 24, 2009 - v1
    Checksum:i980110EFA45E011D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001637 Genomic DNA. Translation: ACX37833.1.
    AP012030 Genomic DNA. Translation: BAJ45308.1.
    RefSeqiYP_006090122.1. NC_017625.1.
    YP_006130853.1. NC_017638.1.

    Genome annotation databases

    EnsemblBacteriaiACX37833; ACX37833; EcDH1_0139.
    BAJ45308; BAJ45308; ECDH1ME8569_3452.
    GeneIDi12703697.
    12871049.
    KEGGiedh:EcDH1_0139.
    edj:ECDH1ME8569_3452.
    PATRICi36692253. VBIEscCol36761_0141.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001637 Genomic DNA. Translation: ACX37833.1 .
    AP012030 Genomic DNA. Translation: BAJ45308.1 .
    RefSeqi YP_006090122.1. NC_017625.1.
    YP_006130853.1. NC_017638.1.

    3D structure databases

    ProteinModelPortali C9QVH3.
    SMRi C9QVH3. Positions 181-670.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACX37833 ; ACX37833 ; EcDH1_0139 .
    BAJ45308 ; BAJ45308 ; ECDH1ME8569_3452 .
    GeneIDi 12703697.
    12871049.
    KEGGi edh:EcDH1_0139.
    edj:ECDH1ME8569_3452.
    PATRICi 36692253. VBIEscCol36761_0141.

    Phylogenomic databases

    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi GQNWHSF.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1Imported and DH1Imported.
    2. "Comparison of sequence reads obtained from three next-generation sequencing platforms."
      Suzuki S., Ono N., Furusawa C., Ying B.-W., Yomo T.
      PLoS ONE 6:E19534-E19534(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DH1Imported.

    Entry informationi

    Entry nameiC9QVH3_ECOD1
    AccessioniPrimary (citable) accession number: C9QVH3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 24, 2009
    Last sequence update: November 24, 2009
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3