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C9QSP6 (C9QSP6_ECOD1) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Cytoplasmic alpha-amylase EMBL BAJ43723.1
Gene names
Name:amyA EMBL BAJ43723.1
Ordered Locus Names:EcDH1_1719 EMBL ACX39378.1, ECDH1ME8569_1867 EMBL BAJ43723.1
OrganismEscherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) [Complete proteome] [HAMAP] EMBL ACX39378.1
Taxonomic identifier536056 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length495 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C9QSP6 [UniParc].

Last modified November 24, 2009. Version 1.
Checksum: 26AFF6797DDA54D6

FASTA49556,639
        10         20         30         40         50         60 
MRNPTLLQCF HWYYPEGGKL WPELAERADG FNDIGINMVW LPPAYKGASG GYSVGYDSYD 

        70         80         90        100        110        120 
LFDLGEFDQK GSIPTKYGDK AQLLAAIDAL KRNDIAVLLD VVVNHKMGAD EKEAIRVQRV 

       130        140        150        160        170        180 
NADDRTQIDE EIIECEGWTR YTFPARAGQY SQFIWDFKCF SGIDHIENPD EDGIFKIVND 

       190        200        210        220        230        240 
YTGEGWNDQV DDELGNFDYL MGENIDFRNH AVTEEIKYWA RWVMEQTQCD GFRLDAVKHI 

       250        260        270        280        290        300 
PAWFYKEWIE HVQEVAPKPL FIVAEYWSHE VDKLQTYIDQ VEGKTMLFDA PLQMKFHEAS 

       310        320        330        340        350        360 
RMGRDYDMTQ IFTGTLVEAD PFHAVTLVAN HDTQPLQALE APVEPWFKPL AYALILLREN 

       370        380        390        400        410        420 
GVPSVFYPDL YGAHYEDVGG DGQTYPIDMP IIEQLDELIL ARQRFAHGVQ TLFFDHPNCI 

       430        440        450        460        470        480 
AFSRSGTDEF PGCVVVMSNG DDGEKTIHLG ENYGNKTWRD FLGNRQERVV TDENGEATFF 

       490 
CNGGSVSVWV IEEVI 

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References

[1]"Complete sequence of Escherichia coli DH1."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Keasling J.D.
Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 and DH1 EMBL ACX39378.1.
[2]"Comparison of sequence reads obtained from three next-generation sequencing platforms."
Suzuki S., Ono N., Furusawa C., Ying B.-W., Yomo T.
PLoS ONE 6:E19534-E19534(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 and DH1 EMBL BAJ43723.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001637 Genomic DNA. Translation: ACX39378.1.
AP012030 Genomic DNA. Translation: BAJ43723.1.
RefSeqYP_006091667.1. NC_017625.1.
YP_006129268.1. NC_017638.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACX39378; ACX39378; EcDH1_1719.
BAJ43723; BAJ43723; ECDH1ME8569_1867.
GeneID12705317.
12871291.
KEGGedh:EcDH1_1719.
edj:ECDH1ME8569_1867.
PATRIC36695686. VBIEscCol36761_1815.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000094847.
KOK01176.
OMARATKYGD.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC9QSP6_ECOD1
AccessionPrimary (citable) accession number: C9QSP6
Entry history
Integrated into UniProtKB/TrEMBL: November 24, 2009
Last sequence update: November 24, 2009
Last modified: July 9, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)