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C9QSP6

- C9QSP6_ECOD1

UniProt

C9QSP6 - C9QSP6_ECOD1

Protein
Submitted name:

Alpha amylase catalytic region

Gene

amyA

Organism
Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (24 Nov 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. calcium ion binding Source: InterPro
    2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase catalytic regionImported
    Submitted name:
    Cytoplasmic alpha-amylaseImported
    Gene namesi
    Name:amyAImported
    Ordered Locus Names:EcDH1_1719Imported, ECDH1ME8569_1867Imported
    OrganismiEscherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)Imported
    Taxonomic identifieri536056 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000002619: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliC9QSP6.
    SMRiC9QSP6. Positions 3-490.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000094847.
    KOiK01176.
    OMAiRATKYGD.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR013776. A-amylase_thermo.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C9QSP6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRNPTLLQCF HWYYPEGGKL WPELAERADG FNDIGINMVW LPPAYKGASG    50
    GYSVGYDSYD LFDLGEFDQK GSIPTKYGDK AQLLAAIDAL KRNDIAVLLD 100
    VVVNHKMGAD EKEAIRVQRV NADDRTQIDE EIIECEGWTR YTFPARAGQY 150
    SQFIWDFKCF SGIDHIENPD EDGIFKIVND YTGEGWNDQV DDELGNFDYL 200
    MGENIDFRNH AVTEEIKYWA RWVMEQTQCD GFRLDAVKHI PAWFYKEWIE 250
    HVQEVAPKPL FIVAEYWSHE VDKLQTYIDQ VEGKTMLFDA PLQMKFHEAS 300
    RMGRDYDMTQ IFTGTLVEAD PFHAVTLVAN HDTQPLQALE APVEPWFKPL 350
    AYALILLREN GVPSVFYPDL YGAHYEDVGG DGQTYPIDMP IIEQLDELIL 400
    ARQRFAHGVQ TLFFDHPNCI AFSRSGTDEF PGCVVVMSNG DDGEKTIHLG 450
    ENYGNKTWRD FLGNRQERVV TDENGEATFF CNGGSVSVWV IEEVI 495
    Length:495
    Mass (Da):56,639
    Last modified:November 24, 2009 - v1
    Checksum:i26AFF6797DDA54D6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001637 Genomic DNA. Translation: ACX39378.1.
    AP012030 Genomic DNA. Translation: BAJ43723.1.
    RefSeqiYP_006091667.1. NC_017625.1.
    YP_006129268.1. NC_017638.1.

    Genome annotation databases

    EnsemblBacteriaiACX39378; ACX39378; EcDH1_1719.
    BAJ43723; BAJ43723; ECDH1ME8569_1867.
    GeneIDi12705317.
    12871291.
    KEGGiedh:EcDH1_1719.
    edj:ECDH1ME8569_1867.
    PATRICi36695686. VBIEscCol36761_1815.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001637 Genomic DNA. Translation: ACX39378.1 .
    AP012030 Genomic DNA. Translation: BAJ43723.1 .
    RefSeqi YP_006091667.1. NC_017625.1.
    YP_006129268.1. NC_017638.1.

    3D structure databases

    ProteinModelPortali C9QSP6.
    SMRi C9QSP6. Positions 3-490.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACX39378 ; ACX39378 ; EcDH1_1719 .
    BAJ43723 ; BAJ43723 ; ECDH1ME8569_1867 .
    GeneIDi 12705317.
    12871291.
    KEGGi edh:EcDH1_1719.
    edj:ECDH1ME8569_1867.
    PATRICi 36695686. VBIEscCol36761_1815.

    Phylogenomic databases

    HOGENOMi HOG000094847.
    KOi K01176.
    OMAi RATKYGD.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR013776. A-amylase_thermo.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001021. Alph-amls_thrmst. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1Imported and DH1Imported.
    2. "Comparison of sequence reads obtained from three next-generation sequencing platforms."
      Suzuki S., Ono N., Furusawa C., Ying B.-W., Yomo T.
      PLoS ONE 6:E19534-E19534(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DH1Imported.

    Entry informationi

    Entry nameiC9QSP6_ECOD1
    AccessioniPrimary (citable) accession number: C9QSP6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 24, 2009
    Last sequence update: November 24, 2009
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3