C9QRJ1 (C9QRJ1_ECOD1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Lipoprotein PIRNR PIRNR002854

Gene names

Name:	metQ EMBL BAJ42047.1
Ordered Locus Names:	EcDH1_3405, ECDH1ME8569_0191 EMBL BAJ42047.1

Organism

Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) [Complete proteome] [HAMAP] EMBL ACX41021.1

Taxonomic identifier

536056 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	271 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the nlpA lipoprotein family. PIRNR PIRNR002854

Ontologies

Keywords
Domain	Signal EMBL ACX41021.1
PTM	Lipoprotein PIRNR PIRNR002854 EMBL ACX41021.1
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL ACX41021.1
	Chain	24 – 271	248	Potential EMBL ACX41021.1		PRO_5000523941

Sequences

	Sequence		Length	Mass (Da)
	C9QRJ1 [UniParc]. Last modified November 24, 2009. Version 1. Checksum: B50CBC6FB5CD2BF7	FASTA	271	29,432
	10 20 30 40 50 60 MAFKFKTFAA VGALIGSLAL VGCGQDEKDP NHIKVGVIVG AEQQVAEVAQ KVAKDKYGLD 70 80 90 100 110 120 VELVTFNDYV LPNEALSKGD IDANAFQHKP YLDQQLKDRG YKLVAVGNTF VYPIAGYSKK 130 140 150 160 170 180 IKSLDELQDG SQVAVPNDPT NLGRSLLLLQ KVGLIKLKDG VGLLPTVLDV VENPKNLKIV 190 200 210 220 230 240 ELEAPQLPRS LDDAQIALAV INTTYASQIG LTPAKDGIFV EDKESPYVNL IVTREDNKDA 250 260 270 ENVKKFVQAY QSDEVYEAAN KVFNGGAVKG W

References

[1]

"Complete sequence of Escherichia coli DH1." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Keasling J.D. Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1.

[2]

"Comparison of sequence reads obtained from three next-generation sequencing platforms." Suzuki S., Ono N., Furusawa C., Ying B.-W., Yomo T. PLoS ONE 6:e19534-e19534(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1 and DH1 EMBL BAJ42047.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001637 Genomic DNA. Translation: ACX41021.1. AP012030 Genomic DNA. Translation: BAJ42047.1.
RefSeq	YP_006093310.1. NC_017625.1. YP_006127592.1. NC_017638.1.
3D structure databases
SMR	C9QRJ1. Positions 33-263.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACX41021; ACX41021; EcDH1_3405. BAJ42047; BAJ42047; ECDH1ME8569_0191.
GeneID	12707039. 12869930.
KEGG	edh:EcDH1_3405. edj:ECDH1ME8569_0191.
PATRIC	36699323. VBIEscCol36761_3598.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222926.
KO	K02073.
OMA	EKNPNHI.
Family and domain databases
InterPro	IPR004872. Lipoprotein_NlpA. [Graphical view]
Pfam	PF03180. Lipoprotein_9. 1 hit. [Graphical view]
PIRSF	PIRSF002854. MetQ. 1 hit.
TIGRFAMs	TIGR00363. TIGR00363. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C9QRJ1_ECOD1

Accession

Primary (citable) accession number: C9QRJ1

Entry history

Integrated into UniProtKB/TrEMBL:	November 24, 2009
Last sequence update:	November 24, 2009
Last modified:	May 29, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)