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Protein

Putative transmembrane protein INAFM1

Gene

INAFM1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transmembrane protein INAFM1Curated
Alternative name(s):
InaF-motif-containing protein 1Imported
Proline-rich protein 24Imported
Gene namesi
Name:INAFM1Imported
Synonyms:PRR24Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 19

Organism-specific databases

HGNCiHGNC:27406. INAFM1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei36 – 5621HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 142142Putative transmembrane protein INAFM1PRO_0000394048Add
BLAST

Proteomic databases

PRIDEiC9JVW0.

Expressioni

Gene expression databases

BgeeiC9JVW0.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000407321.

Structurei

3D structure databases

ProteinModelPortaliC9JVW0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi57 – 13377Pro-richAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG278648.
GeneTreeiENSGT00550000076229.
HOGENOMiHOG000170817.
InParanoidiC9JVW0.
OMAiWVPTRPP.
OrthoDBiEOG7G4QJM.
PhylomeDBiC9JVW0.

Family and domain databases

InterProiIPR029162. InaF-motif.
[Graphical view]
PfamiPF15018. InaF-motif. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9JVW0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRGTSCVGGG AESPGGAGLS EGPRGRWLRL APVCAYFLCV SLAAVLLAVY
60 70 80 90 100
YGLIWVPTRS PAAPAGPQPS APSPPCAARP GVPPVPAPAA ASLSCLLGVP
110 120 130 140
GGPRPQLQLP LSRRRRYSDP DRRPSRQTPR ETPEAAEGRR PG
Length:142
Mass (Da):14,668
Last modified:November 3, 2009 - v1
Checksum:i9F25234D6106E829
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008532 Genomic DNA. No translation available.
CCDSiCCDS46131.1.
RefSeqiNP_848606.3. NM_178511.5.
UniGeneiHs.128690.

Genome annotation databases

EnsembliENST00000552360; ENSP00000447679; ENSG00000257704.
GeneIDi255783.
KEGGihsa:255783.
UCSCiuc002pgi.3. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008532 Genomic DNA. No translation available.
CCDSiCCDS46131.1.
RefSeqiNP_848606.3. NM_178511.5.
UniGeneiHs.128690.

3D structure databases

ProteinModelPortaliC9JVW0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000407321.

Proteomic databases

PRIDEiC9JVW0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000552360; ENSP00000447679; ENSG00000257704.
GeneIDi255783.
KEGGihsa:255783.
UCSCiuc002pgi.3. human.

Organism-specific databases

CTDi255783.
GeneCardsiGC19P047778.
HGNCiHGNC:27406. INAFM1.
neXtProtiNX_C9JVW0.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG278648.
GeneTreeiENSGT00550000076229.
HOGENOMiHOG000170817.
InParanoidiC9JVW0.
OMAiWVPTRPP.
OrthoDBiEOG7G4QJM.
PhylomeDBiC9JVW0.

Miscellaneous databases

ChiTaRSiPRR24. human.
GenomeRNAii255783.
NextBioi92643.

Gene expression databases

BgeeiC9JVW0.

Family and domain databases

InterProiIPR029162. InaF-motif.
[Graphical view]
PfamiPF15018. InaF-motif. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The DNA sequence and biology of human chromosome 19."
    Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V.
    , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
    Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiINAM1_HUMAN
AccessioniPrimary (citable) accession number: C9JVW0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 18, 2010
Last sequence update: November 3, 2009
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.