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Protein

Kelch repeat and BTB domain-containing protein 13

Gene

KBTBD13

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex.1 Publication

Pathway: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ubl conjugation pathway

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
Kelch repeat and BTB domain-containing protein 13
Gene namesi
Name:KBTBD13
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:37227. KBTBD13.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

Pathology & Biotechi

Involvement in diseasei

Nemaline myopathy 6 (NEM6)1 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA form of nemaline myopathy characterized by childhood onset of slowly progressive proximal muscle weakness, exercise intolerance, and slow movements with stiff muscles. Patients are unable to run or correct themselves from falling over.

See also OMIM:609273
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti248 – 2481R → S in NEM6. 1 Publication
VAR_064889
Natural varianti390 – 3901K → N in NEM6. 1 Publication
VAR_064890
Natural varianti408 – 4081R → C in NEM6. 1 Publication
VAR_064891

Keywords - Diseasei

Disease mutation, Nemaline myopathy

Organism-specific databases

MIMi609273. phenotype.
Orphaneti171439. Childhood-onset nemaline myopathy.
PharmGKBiPA165479144.

Polymorphism and mutation databases

BioMutaiKBTBD13.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 458458Kelch repeat and BTB domain-containing protein 13PRO_0000393906Add
BLAST

Post-translational modificationi

Autoubiquitinated.1 Publication

Keywords - PTMi

Ubl conjugation

Proteomic databases

PaxDbiC9JR72.
PRIDEiC9JR72.

PTM databases

PhosphoSiteiC9JR72.

Expressioni

Tissue specificityi

Expressed in skeletal muscle.1 Publication

Gene expression databases

BgeeiC9JR72.

Organism-specific databases

HPAiHPA062737.

Interactioni

Subunit structurei

Component of the BCR(KBTBD13) E3 ubiquitin ligase complex, at least composed of CUL3 and KBTBD13 and RBX1. Interacts with CUL3.1 Publication

Protein-protein interaction databases

BioGridi133620. 2 interactions.
STRINGi9606.ENSP00000388723.

Structurei

3D structure databases

ProteinModelPortaliC9JR72.
SMRiC9JR72. Positions 138-426.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 7468BTBPROSITE-ProRule annotationAdd
BLAST
Repeati159 – 20951Kelch 1Add
BLAST
Repeati210 – 25849Kelch 2Add
BLAST
Repeati259 – 30547Kelch 3Add
BLAST
Repeati307 – 35044Kelch 4Add
BLAST
Repeati352 – 40049Kelch 5Add
BLAST

Domaini

The BCB domain mediates the interaction with CUL3.

Sequence similaritiesi

Contains 1 BTB (POZ) domain.PROSITE-ProRule annotation
Contains 5 Kelch repeats.Curated

Keywords - Domaini

Kelch repeat, Repeat

Phylogenomic databases

eggNOGiNOG280568.
GeneTreeiENSGT00760000118825.
HOGENOMiHOG000147850.
InParanoidiC9JR72.
OMAiTSDNCAL.
OrthoDBiEOG7X9G6R.
PhylomeDBiC9JR72.
TreeFamiTF328485.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
InterProiIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
[Graphical view]
PfamiPF00651. BTB. 1 hit.
PF01344. Kelch_1. 2 hits.
[Graphical view]
SMARTiSM00225. BTB. 1 hit.
SM00612. Kelch. 2 hits.
[Graphical view]
SUPFAMiSSF54695. SSF54695. 1 hit.
PROSITEiPS50097. BTB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9JR72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARGPQTLVQ VWVGGQLFQA DRALLVEHCG FFRGLFRSGM RETRAAEVRL
60 70 80 90 100
GVLSAGGFRA TLQVLRGDRP ALAAEDELLQ AVECAAFLQA PALARFLEHN
110 120 130 140 150
LTSDNCALLC DAAAAFGLRD VFHSAALFIC DGERELAAEL ALPEARAYVA
160 170 180 190 200
ALRPSSYAAV STHTPAPGFL EDASRTLCYL DEEEDAWRTL AALPLEASTL
210 220 230 240 250
LAGVATLGNK LYIVGGVRGA SKEVVELGFC YDPDGGTWHE FPSPHQPRYD
260 270 280 290 300
TALAGFDGRL YAIGGEFQRT PISSVERYDP AAGCWSFVAD LPQPAAGVPC
310 320 330 340 350
AQACGRLFVC LWRPADTTAV VEYAVRTDAW LPVAELRRPQ SYGHCMVAHR
360 370 380 390 400
DSLYVVRNGP SDDFLHCAID CLNLATGQWT ALPGQFVNSK GALFTAVVRG
410 420 430 440 450
DTVYTVNRMF TLLYAIEGGT WRLLREKAGF PRPGSLQTFL LRLPPGAPGP

VTSTTAEL
Length:458
Mass (Da):49,485
Last modified:November 3, 2009 - v1
Checksum:i4FFD143F16171BCD
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti248 – 2481R → S in NEM6. 1 Publication
VAR_064889
Natural varianti390 – 3901K → N in NEM6. 1 Publication
VAR_064890
Natural varianti408 – 4081R → C in NEM6. 1 Publication
VAR_064891

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC013553 Genomic DNA. No translation available.
CH471082 Genomic DNA. Translation: EAW77711.1.
CCDSiCCDS45281.1.
RefSeqiNP_001094832.1. NM_001101362.2.
UniGeneiHs.586890.

Genome annotation databases

EnsembliENST00000432196; ENSP00000388723; ENSG00000234438.
GeneIDi390594.
KEGGihsa:390594.
UCSCiuc010uis.2. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC013553 Genomic DNA. No translation available.
CH471082 Genomic DNA. Translation: EAW77711.1.
CCDSiCCDS45281.1.
RefSeqiNP_001094832.1. NM_001101362.2.
UniGeneiHs.586890.

3D structure databases

ProteinModelPortaliC9JR72.
SMRiC9JR72. Positions 138-426.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi133620. 2 interactions.
STRINGi9606.ENSP00000388723.

PTM databases

PhosphoSiteiC9JR72.

Polymorphism and mutation databases

BioMutaiKBTBD13.

Proteomic databases

PaxDbiC9JR72.
PRIDEiC9JR72.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000432196; ENSP00000388723; ENSG00000234438.
GeneIDi390594.
KEGGihsa:390594.
UCSCiuc010uis.2. human.

Organism-specific databases

CTDi390594.
GeneCardsiGC15P065369.
GeneReviewsiKBTBD13.
HGNCiHGNC:37227. KBTBD13.
HPAiHPA062737.
MIMi609273. phenotype.
613727. gene.
neXtProtiNX_C9JR72.
Orphaneti171439. Childhood-onset nemaline myopathy.
PharmGKBiPA165479144.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG280568.
GeneTreeiENSGT00760000118825.
HOGENOMiHOG000147850.
InParanoidiC9JR72.
OMAiTSDNCAL.
OrthoDBiEOG7X9G6R.
PhylomeDBiC9JR72.
TreeFamiTF328485.

Enzyme and pathway databases

UniPathwayiUPA00143.

Miscellaneous databases

GenomeRNAii390594.
NextBioi103889.
PROiC9JR72.
SOURCEiSearch...

Gene expression databases

BgeeiC9JR72.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
InterProiIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
[Graphical view]
PfamiPF00651. BTB. 1 hit.
PF01344. Kelch_1. 2 hits.
[Graphical view]
SMARTiSM00225. BTB. 1 hit.
SM00612. Kelch. 2 hits.
[Graphical view]
SUPFAMiSSF54695. SSF54695. 1 hit.
PROSITEiPS50097. BTB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: FUNCTION, AUTOUBIQUITINATION, INTERACTION WITH CUL3, SUBCELLULAR LOCATION.
  4. Cited for: VARIANTS NEM6 SER-248; ASN-390 AND CYS-408, SUBCELLULAR LOCATION, TISSUE SPECIFICITY.

Entry informationi

Entry nameiKBTBD_HUMAN
AccessioniPrimary (citable) accession number: C9JR72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 18, 2010
Last sequence update: November 3, 2009
Last modified: June 24, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.