C9JIE4 (C9JIE4_HUMAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Synemin Ensembl ENSP00000330469

Gene names

Name:

SYNM Ensembl ENSP00000330469

Organism

Homo sapiens (Human) [Reference proteome] Ensembl ENSP00000330469

Taxonomic identifier

9606 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo

Protein attributes

Sequence length	1252 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities	Belongs to the intermediate filament family. RuleBase RU000685
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSP00000330469

Ontologies

Keywords
Cellular component	Intermediate filament RuleBase RU000685 SAAS SAAS018039
Domain	Coiled coil SAAS SAAS018039
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	intermediate filament Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C9JIE4 [UniParc]. Last modified November 3, 2009. Version 1. Checksum: 9B7058AA8F8E3047	FASTA	1,252	140,034
	10 20 30 40 50 60 MLSWRLQTGP EKAELQELNA RLYDYVCRVR ELERENLLLE EELRGRRGRE GLWAEGQARC 70 80 90 100 110 120 AEEARSLRQQ LDELSWATAL AEGERDALRR ELRELQRLDA EERAARGRLD AELGAQQREL 130 140 150 160 170 180 QEALGARAAL EALLGRLQAE RRGLDAAHER DVRELRARAA SLTMHFRARA TGPAAPPPRL 190 200 210 220 230 240 REVHDSYALL VAESWRETVQ LYEDEVRELE EALRRGQESR LQAEEETRLC AQEAALRREA 250 260 270 280 290 300 LGLEQLRARL EDALLRMREE YGIQAEERQR VIDCLEDEKA TLTLAMADWL RDYQDLLQVK 310 320 330 340 350 360 TGLSLEVATY RALLEGESNP EIVIWAEHVE NMPSEFRNKS YHYTDSLLQR ENERNLFSRQ 370 380 390 400 410 420 KAPLASFNHS SALYSNLSGH RGSQTGTSIG GDARRGFLGS GYSSSATTQQ ENSYGKAVSS 430 440 450 460 470 480 QTNVRTFSPT YGLLRNTEAQ VKTFPDRPKA GDTREVPVYI GEDSTIARES YRDRRDKVAA 490 500 510 520 530 540 GASESTRSNE RTVILGKKTE VKATREQERN RPETIRTKPE EKMFDSKEKA SEERNLRWEE 550 560 570 580 590 600 LTKLDKEARQ RESQQMKEKA KEKDSPKEKS VREREVPISL EVSQDRRAEV SPKGLQTPVK 610 620 630 640 650 660 DAGGGTGREA EARELRFRLG TSDATGSLQG DSMTETVAEN IVTSILKQFT QSPETEASAD 670 680 690 700 710 720 SFPDTKVTYV DRKELPGERK TKTEIVVESK LTEDVDVSDE AGLDYLLSKD IKEVGLKGKS 730 740 750 760 770 780 AEQMIGDIIN LGLKGREGRA KVVNVEIVEE PVSYVSGEKP EEFSVPFKVE EVEDVSPGPW 790 800 810 820 830 840 GLVKEEEGYG ESDVTFSVNQ HRRTKQPQEN TTHVEEVTEA GDSEGEQSYF VSTPDEHPGG 850 860 870 880 890 900 HDRDDGSVYG QIHIEEESTI RYSWQDEIVQ GTRRRTQKDG AVGEKVVKPL DVPAPSLEGD 910 920 930 940 950 960 LGSTHWKEQA RSGEFHAEPT VIEKEIKIPH EFHTSMKGIS SKEPRQQLVE VIGQLEETLP 970 980 990 1000 1010 1020 ERMREELSAL TREGQGGPGS VSVDVKKVQG AGGSSVTLVA EVNVSQTVDA DRLDLEELSK 1030 1040 1050 1060 1070 1080 DEASEMEKAV ESVVRESLSR QRSPAPGSPD EEGGAEAPAA GIRFRRWATR ELYIPSGESE 1090 1100 1110 1120 1130 1140 VAGGASHSSG QRTPQGPVSA TVEVSSPTGF AQSQVLEDVS QAARHIKLGP SEVWRTERMS 1150 1160 1170 1180 1190 1200 YEGPTAEVVE MDVSNVEAIR SRTQEAGALG VSDRGSWRDA DSRNDQAVGV SFKASAGEGD 1210 1220 1230 1240 1250 QAHREQGKEQ AMFDKKVQLQ RMVDQRSVIS DEKKVALLYL DNEEEENDGH WF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of the DNA sequence and duplication history of human chromosome 15." Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A. , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C. Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC036108 Genomic DNA. No translation available.
IPI	IPI00299302.
3D structure databases
ProteinModelPortal	C9JIE4.
SMR	C9JIE4. Positions 250-317.
ModBase	Search...
Protein-protein interaction databases
STRING	C9JIE4.
Proteomic databases
PRIDE	C9JIE4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENST00000328642; ENSP00000330469; ENSG00000182253.
Organism-specific databases
HGNC	HGNC:24466. SYNM.
GenAtlas	Search...
Phylogenomic databases
HOGENOM	HOG000154476.
OrthoDB	EOG4F1X2N.
Gene expression databases
ArrayExpress	C9JIE4.
Bgee	C9JIE4.
Family and domain databases
InterPro	IPR016044. F. IPR001664. IF. IPR018039. Intermediate_filament_CS. [Graphical view]
PANTHER	PTHR23239. PTHR23239. 1 hit.
Pfam	PF00038. Filament. 1 hit. [Graphical view]
PROSITE	PS00226. IF. 1 hit. [Graphical view]
ProtoNet	Search...
Other
ChiTaRS	SYNM. human.
NextBio	35486608.

Entry information

Entry name

C9JIE4_HUMAN

Accession

Primary (citable) accession number: C9JIE4

Entry history

Integrated into UniProtKB/TrEMBL:	November 3, 2009
Last sequence update:	November 3, 2009
Last modified:	May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.