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Protein
Submitted name:

Synaptojanin-1

Gene

SYNJ1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseSAAS annotation, RNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Synaptojanin-1Imported
Gene namesi
Name:SYNJ1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 21

Organism-specific databases

EuPathDBiHostDB:ENSG00000159082.17
HGNCiHGNC:11503 SYNJ1

Subcellular locationi

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000159082
PharmGKBiPA36285

PTM / Processingi

Proteomic databases

MaxQBiC9JFZ1
PRIDEiC9JFZ1

Expressioni

Gene expression databases

BgeeiENSG00000159082
ExpressionAtlasiC9JFZ1 baseline and differential
GenevisibleiC9JFZ1 HS

Structurei

3D structure databases

ProteinModelPortaliC9JFZ1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini158 – 481SACInterPro annotationAdd BLAST324
Domaini941 – 1010RRMInterPro annotationAdd BLAST70

Phylogenomic databases

eggNOGiKOG0566 Eukaryota
COG5329 LUCA
COG5411 LUCA
GeneTreeiENSGT00760000119075
HOGENOMiHOG000007937

Family and domain databases

CDDicd12719 RRM_SYNJ1, 1 hit
Gene3Di3.30.70.3301 hit
3.60.10.101 hit
InterProiView protein in InterPro
IPR015047 DUF1866
IPR036691 Endo/exonu/phosph_ase_sf
IPR005135 Endo/exonuclease/phosphatase
IPR000300 IPPc
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR002013 SAC_dom
IPR034972 SYNJ1
IPR034971 SYNJ1_RRM
PANTHERiPTHR11200:SF158 PTHR11200:SF158, 1 hit
PfamiView protein in Pfam
PF08952 DUF1866, 1 hit
PF03372 Exo_endo_phos, 1 hit
PF02383 Syja_N, 1 hit
SMARTiView protein in SMART
SM01165 DUF1866, 1 hit
SM00128 IPPc, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
SSF56219 SSF56219, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
PS50275 SAC, 1 hit

Sequencei

Sequence statusi: Complete.

C9JFZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKRWACWSG SDAPGGCGGG CGRRRRRSRR KRAASEERRM AFSKGFRIYH
60 70 80 90 100
KLDPPPFSLI VETRHKEECL MFESGAVAVL SSAEKEAIKG TYSKVLDAYG
110 120 130 140 150
LLGVLRLNLG DTMLHYLVLV TGCMSVGKIQ ESEVFRVTST EFISLRIDSS
160 170 180 190 200
DEDRISEVRK VLNSGNFYFA WSASGISLDL SLNAHRSMQE QTTDNRFFWN
210 220 230 240 250
QSLHLHLKHY GVNCDDWLLR LMCGGVEIRT IYAAHKQAKA CLISRLSCER
260 270 280 290 300
AGTRFNVRGT NDDGHVANFV ETEQVVYLDD SVSSFIQIRG SVPLFWEQPG
310 320 330 340 350
LQVGSHRVRM SRGFEANAPA FDRHFRTLKN LYGKQIIVNL LGSKEGEHML
360 370 380 390 400
SKAFQSHLKA SEHAADIQMV NFDYHQMVKG GKAEKLHSVL KPQVQKFLDY
410 420 430 440 450
GFFYFNGSEV QRCQSGTVRT NCLDCLDRTN SVQAFLGLEM LAKQLEALGL
460 470 480 490 500
AEKPQLVTRF QEVFRSMWSV NGDSISKIYA GTGALEGKAK LKDGARSVTR
510 520 530 540 550
TIQNNFFDSS KQEAIDVLLL GNTLNSDLAD KARALLTTGS LRVSEQTLQS
560 570 580 590 600
ASSKVLKSMC ENFYKYSKPK KIRVCVGTWN VNGGKQFRSI AFKNQTLTDW
610 620 630 640 650
LLDAPKLAGI QEFQDKRSKP TDIFAIGFEE MVELNAGNIV SASTTNQKLW
660 670 680 690 700
AVELQKTISR DNKYVLLASE QLVGVCLFVF IRPQHAPFIR DVAVDTVKTG
710 720 730 740 750
MGGATGNKGA VAIRMLFHTT SLCFVCSHFA AGQSQVKERN EDFIEIARKL
760 770 780 790 800
SFPMGRMLFS HDYVFWCGDF NYRIDLPNEE VKELIRQQNW DSLIAGDQLI
810 820 830 840 850
NQKNAGQVFR GFLEGKVTFA PTYKYDLFSD DYDTSEKCRT PAWTDRVLWR
860 870 880 890 900
RRKWPFDRSA EDLDLLNASF QDESKILYTW TPGTLLHYGR AELKTSDHRP
910 920 930 940 950
VVALIDIDIF EVEAEERQNI YKEVIAVQGP PDGTVLVSIK SSLPENNFFD
960 970 980 990 1000
DALIDELLQQ FASFGEVILI RFVEDKMWVT FLEGSSALNV LSLNGKELLN
1010 1020 1030 1040 1050
RTITIALKSP DWIKNLEEEM SLEKISIALP SSTSSTLLGE DAEVAADFDM
1060 1070 1080 1090 1100
EGDVDDYSAE VEELLPQHLQ PSSSSGLGTS PSSSPRTSPC QSPTISEGPV
1110 1120 1130 1140 1150
PSLPIRPSRA PSRTPGPPSA QSSPIDAQPA TPLPQKDPAQ PLEPKRPPPP
1160 1170 1180 1190 1200
RPVAPPTRPA PPQRPPPPSG ARSPAPTRKE FGGIGAPPSP GVARREMEAP
1210 1220 1230 1240 1250
KSPGTTRKDN IGRSQPSPQA GLAGPGPAGY STARPTIPPR AGVISAPQSH
1260 1270 1280 1290 1300
ARASAGRLTP ESQSKTSETS KGSTFLPEPL KPQAAFPPQS SLPPPAQRLQ
1310 1320 1330 1340 1350
EPLVPVAAPM PQSGPQPNLE TPPQPPPRSR SSHSLPSEAS SQPQQEQPSG
Length:1,350
Mass (Da):149,305
Last modified:November 3, 2009 - v1
Checksum:i0CBDF57D8A208085
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP000275 Genomic DNA No translation available.
AP000276 Genomic DNA No translation available.
AP000277 Genomic DNA No translation available.
AP000278 Genomic DNA No translation available.
AP000279 Genomic DNA No translation available.
KC877861 Genomic DNA No translation available.
KF510544 Genomic DNA No translation available.
RefSeqiNP_982271.2, NM_203446.2
UniGeneiHs.473632

Genome annotation databases

EnsembliENST00000382499; ENSP00000371939; ENSG00000159082
GeneIDi8867
UCSCiuc002yqi.3 human

Similar proteinsi

Entry informationi

Entry nameiC9JFZ1_HUMAN
AccessioniPrimary (citable) accession number: C9JFZ1
Entry historyiIntegrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: April 25, 2018
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported