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Protein
Submitted name:

Translocon-associated protein subunit alpha

Gene

SSR1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Translocon-associated protein subunit alphaImported
Gene namesi
Name:SSR1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:11323. SSR1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei140 – 161HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000124783.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_500299641922 – 218Sequence analysisAdd BLAST197

Proteomic databases

MaxQBiC9JBX5.
PaxDbiC9JBX5.
PeptideAtlasiC9JBX5.
PRIDEiC9JBX5.

Expressioni

Gene expression databases

BgeeiENSG00000124783.
ExpressionAtlasiC9JBX5. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000244763.

Structurei

3D structure databases

ProteinModelPortaliC9JBX5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1631. Eukaryota.
ENOG410XNTM. LUCA.
GeneTreeiENSGT00400000022103.
HOGENOMiHOG000006932.

Family and domain databases

InterProiIPR005595. TRAP_alpha.
[Graphical view]
PfamiPF03896. TRAP_alpha. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9JBX5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLLPRLLLL LLLVFPATVL FRGGPRGLLA VAQDLTEDEE TVEDSIIEDE
60 70 80 90 100
DDEAEVEEDE PTDLVEDKEE EDVSGEPEAS PSADTTILFV KGEEPMGGRP
110 120 130 140 150
FGLVINLNYK DLNGNVFQDA VFNQTVTVIE REDGLDGETI FMYMFLAGLG
160 170 180 190 200
LLVIVGLHQL LESRKRKRPI QKVEMGTSSQ NDVDMSWIPQ ETLNQINKAS
210
PRRLPRKRAQ KRSVGSDE
Length:218
Mass (Da):24,411
Last modified:November 3, 2009 - v1
Checksum:i00DCD67AF9546ACB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL139095 Genomic DNA. No translation available.
RefSeqiNP_001278937.1. NM_001292008.1.
UniGeneiHs.114033.

Genome annotation databases

EnsembliENST00000489567; ENSP00000420730; ENSG00000124783.
GeneIDi6745.
UCSCiuc063lqw.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL139095 Genomic DNA. No translation available.
RefSeqiNP_001278937.1. NM_001292008.1.
UniGeneiHs.114033.

3D structure databases

ProteinModelPortaliC9JBX5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000244763.

Proteomic databases

MaxQBiC9JBX5.
PaxDbiC9JBX5.
PeptideAtlasiC9JBX5.
PRIDEiC9JBX5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000489567; ENSP00000420730; ENSG00000124783.
GeneIDi6745.
UCSCiuc063lqw.1. human.

Organism-specific databases

CTDi6745.
HGNCiHGNC:11323. SSR1.
OpenTargetsiENSG00000124783.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG1631. Eukaryota.
ENOG410XNTM. LUCA.
GeneTreeiENSGT00400000022103.
HOGENOMiHOG000006932.

Miscellaneous databases

ChiTaRSiSSR1. human.
GenomeRNAii6745.

Gene expression databases

BgeeiENSG00000124783.
ExpressionAtlasiC9JBX5. baseline and differential.

Family and domain databases

InterProiIPR005595. TRAP_alpha.
[Graphical view]
PfamiPF03896. TRAP_alpha. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiC9JBX5_HUMAN
AccessioniPrimary (citable) accession number: C9JBX5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: November 30, 2016
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.