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C9J5N1 (C9J5N1_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length495 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSP00000386254

Sequences

Sequence LengthMass (Da)Tools
C9J5N1 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: EBB6575CC3625575

FASTA49555,066
        10         20         30         40         50         60 
MEFCVEDSTD VHVLIEDHRI VFSCKNADGV ELYNEIEFYA KVNSKDSQDK RSSRSITCFV 

        70         80         90        100        110        120 
RKWKEKVAWP RLTKEDIKLL KKVSTKRPPP AMDDLDFTTT VVSCCPAELQ TEGSNGKKEV 

       130        140        150        160        170        180 
LSGFQVVLED TVLFPEGGGQ PDDRGTINDI SVLRVTRRGE QADHFTQTPL DPGSQVLVRV 

       190        200        210        220        230        240 
DWERRFDHMQ QHSGQHLITA VADHLFKLKT TSWELGRFRS AIELDTPSMT AEQVAAIEQS 

       250        260        270        280        290        300 
VNEKIRDRLP VNVRELSLDD PEVEQVSGRG LPDDHAGPIR VVNIEGVDSN MCCGTHVSNL 

       310        320        330        340        350        360 
SDLQVIKILG TEKGKKNRTN LIFLSGNRVL KWMERSHGTE KALTALLKCG AEDHVEAVKK 

       370        380        390        400        410        420 
LQNSTKILQK NNLNLLRDLA VHIAHSLRNS PDWGGVVILH RKEGDSEFMN IIANEIGSEE 

       430        440        450        460        470        480 
TLLFLTVGDE KGGGLFLLAG PPASVETLGP RVAEVLEGKG AGKKGRFQGK ATKMSRRMEA 

       490 
QALLQDYIST QSAKE 

« Hide

References

« Hide 'large scale' references
[1]"DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L. expand/collapse author list , Chen C.K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Initial characterization of the human central proteome."
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Burckstummer T., Bennett K.L., Superti-Furga G., Colinge J.
BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[3]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC055866 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortalC9J5N1.
SMRC9J5N1. Positions 1-79, 81-330.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

MaxQBC9J5N1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000409103; ENSP00000386254; ENSG00000108825.

Organism-specific databases

HGNCHGNC:43946. PTGES3L-AARSD1.
GenAtlasSearch...

Phylogenomic databases

HOGENOMHOG000230967.

Gene expression databases

BgeeC9J5N1.

Family and domain databases

Gene3D2.60.40.790. 1 hit.
InterProIPR018165. Ala-tRNA-synth_IIc_core.
IPR018164. Ala-tRNA-synth_IIc_N.
IPR007052. CS_dom.
IPR008978. HSP20-like_chaperone.
IPR018163. Thr/Ala-tRNA-synth_IIc_edit.
IPR009000. Transl_B-barrel.
IPR012947. tRNA_SAD.
[Graphical view]
PfamPF01411. tRNA-synt_2c. 1 hit.
PF07973. tRNA_SAD. 1 hit.
[Graphical view]
SMARTSM00863. tRNA_SAD. 1 hit.
[Graphical view]
SUPFAMSSF49764. SSF49764. 1 hit.
SSF50447. SSF50447. 1 hit.
SSF55186. SSF55186. 1 hit.
PROSITEPS50860. AA_TRNA_LIGASE_II_ALA. 1 hit.
PS51203. CS. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35485088.

Entry information

Entry nameC9J5N1_HUMAN
AccessionPrimary (citable) accession number: C9J5N1
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: June 11, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.