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Protein
Submitted name:

Translocon-associated protein subunit gamma

Gene

SSR3

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Translocon-associated protein subunit gammaImported
Gene namesi
Name:SSR3Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

HGNCiHGNC:11325. SSR3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2520HelicalSequence analysisAdd
BLAST
Transmembranei86 – 10520HelicalSequence analysisAdd
BLAST
Transmembranei111 – 13020HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PeptideAtlasiC9J365.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000265044.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG4490. Eukaryota.
ENOG410XR1X. LUCA.
GeneTreeiENSGT00390000000970.
HOGENOMiHOG000007534.

Family and domain databases

InterProiIPR009779. SSR3.
[Graphical view]
PANTHERiPTHR13399. PTHR13399. 1 hit.
PfamiPF07074. TRAP-gamma. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C9J365-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLIQSAVLY SVMTLVSTYL VAFAYKNVKF VLKHKVAQKR EDAVSKEVTR
60 70 80 90 100
KLSEADNRKM SRKEKDERIL WKKNEVADYE ATTFSIFYNN TLFLVVVIVA
110 120 130
SFFILKNFNP TVNYILSISA SSGLIALLST GSK
Length:133
Mass (Da):15,113
Last modified:November 3, 2009 - v1
Checksum:iB053A7EEF645D1A4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC092927 Genomic DNA. No translation available.
RefSeqiNP_001295133.1. NM_001308204.1.
NP_001295134.1. NM_001308205.1.
UniGeneiHs.518346.
Hs.660787.

Genome annotation databases

EnsembliENST00000463503; ENSP00000417306; ENSG00000114850.
ENST00000496050; ENSP00000420087; ENSG00000114850.
GeneIDi6747.
UCSCiuc062pgn.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC092927 Genomic DNA. No translation available.
RefSeqiNP_001295133.1. NM_001308204.1.
NP_001295134.1. NM_001308205.1.
UniGeneiHs.518346.
Hs.660787.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000265044.

Proteomic databases

PeptideAtlasiC9J365.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000463503; ENSP00000417306; ENSG00000114850.
ENST00000496050; ENSP00000420087; ENSG00000114850.
GeneIDi6747.
UCSCiuc062pgn.1. human.

Organism-specific databases

CTDi6747.
HGNCiHGNC:11325. SSR3.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG4490. Eukaryota.
ENOG410XR1X. LUCA.
GeneTreeiENSGT00390000000970.
HOGENOMiHOG000007534.

Miscellaneous databases

ChiTaRSiSSR3. human.
GenomeRNAii6747.

Family and domain databases

InterProiIPR009779. SSR3.
[Graphical view]
PANTHERiPTHR13399. PTHR13399. 1 hit.
PfamiPF07074. TRAP-gamma. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence, annotation and analysis of human chromosome 3."
    Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J.
    , Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R., Lozado R.J., Metzker M.L., Milosavljevic A., Miner G.R., Morgan M.B., Nazareth L.V., Scott G., Sodergren E., Song X.Z., Steffen D., Wei S., Wheeler D.A., Wright M.W., Worley K.C., Yuan Y., Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., Chen Z., Clendenning J., Clerc-Blankenburg K.P., Chen R., Chen Z., Davis C., Delgado O., Dinh H.H., Dong W., Draper H., Ernst S., Fu G., Gonzalez-Garay M.L., Garcia D.K., Gillett W., Gu J., Hao B., Haugen E., Havlak P., He X., Hennig S., Hu S., Huang W., Jackson L.R., Jacob L.S., Kelly S.H., Kube M., Levy R., Li Z., Liu B., Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.V., Okwuonu G.O., Palmeiri A., Pasternak S., Perez L.M., Phelps K.A., Plopper F.J., Qiang B., Raymond C., Rodriguez R., Saenphimmachak C., Santibanez J., Shen H., Shen Y., Subramanian S., Tabor P.E., Verduzco D., Waldron L., Wang J., Wang J., Wang Q., Williams G.A., Wong G.K., Yao Z., Zhang J., Zhang X., Zhao G., Zhou J., Zhou Y., Nelson D., Lehrach H., Reinhardt R., Naylor S.L., Yang H., Olson M., Weinstock G., Gibbs R.A.
    Nature 440:1194-1198(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
  4. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
  5. "N-terminome analysis of the human mitochondrial proteome."
    Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M., Ayoub D., Lane L., Bairoch A., Van Dorsselaer A., Carapito C.
    Proteomics 15:2519-2524(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiC9J365_HUMAN
AccessioniPrimary (citable) accession number: C9J365
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: July 6, 2016
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.