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C8XIX5

- C8XIX5_NAKMY

UniProt

C8XIX5 - C8XIX5_NAKMY

Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Namu_0128

Organism
Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) (Microsphaera multipartita)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (03 Nov 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Enzyme and pathway databases

    BioCyciNMUL479431:GHQL-131-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA polymerase LigD, polymerase domain proteinImported
    Gene namesi
    Ordered Locus Names:Namu_0128Imported
    OrganismiNakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) (Microsphaera multipartita)Imported
    Taxonomic identifieri479431 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeNakamurellaceaeNakamurella
    ProteomesiUP000002218: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi479431.Namu_0128.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C8XIX5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAADSATVEV DGHRIALTHL RKVLYPASGT TKSEVIAYFA EVAHAMIPHL    50
    ADRPVTRKRW PDGVTTAPFF HKDLPKGTPS WVPRRTIRHS DGPKDYPLVD 100
    SPATLAWLGQ IAALELHVPQ WTFGSAAASV AGGDGEITEA VFDAVHPNRL 150
    VFDLDPGPGV ELVDCAHVAR AVRERMGGAA LVPVTSGSKG IHLYAWLDGS 200
    LTSDDASAYA REIAEAIEQD MPDLVVSRMA KSLRRGKVFI DWSQNNGSKT 250
    TIAPYSLRGR EHPTVAAPRT WEELADPELR HLEYTEVLEL LAAAPDPMQG 300
    LEDGDNDGAE TRGGSRRRGR GPDTKLDTYR SMRSADKTPE PVPEPGLLPQ 350
    GDDDTFVIQE HHARRLHYDF RLERDGVLVS WAVPKGVPES TGRNHLAVHT 400
    EDHPMDYADF AGEIPHGEYG GGTVSIWDRG TYATEKWRED EVIIVLHGGK 450
    ARGRYALIRT GGKNWLMHRM KDQSPQPKQY DDHRPATPTA PVTARPAPAR 500
    STRPEPPKDL RPMLATAGSV EDVADERRWR FEGKWDGIRA IATVGPSGLT 550
    LRSRLGNDVT PTYPELAVLA ELLDGHSAVL DGEIVALQDG RTSFHEMQKR 600
    MNVQRARDVA RVMRDVPVQF WIFDVLNLDG ISLLDKRYDD RRRILEALPL 650
    TGGVCLVPPQ LAGPARDALR GSADRQWEGI VAKLGDSTYQ PGRRSHSWLK 700
    IKNFLDLEVV VVGWSPGTGR REGTVGALLL AVPDGAGGLR YAGKVGTGFT 750
    DAILDQLMQA LAPLRADRSA VADTIPRADA AGAIWVRPEL VGEVKYGQWT 800
    PERRLRATSW RGLRPDKTVA DLIAGSAPPP S 831
    Length:831
    Mass (Da):91,090
    Last modified:November 3, 2009 - v1
    Checksum:i1D4EC185FB362C25
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001737 Genomic DNA. Translation: ACV76562.1.
    RefSeqiWP_012814037.1. NC_013235.1.
    YP_003199551.1. NC_013235.1.

    Genome annotation databases

    EnsemblBacteriaiACV76562; ACV76562; Namu_0128.
    GeneIDi8445708.
    KEGGinml:Namu_0128.
    PATRICi22657752. VBINakMul62011_0131.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001737 Genomic DNA. Translation: ACV76562.1 .
    RefSeqi WP_012814037.1. NC_013235.1.
    YP_003199551.1. NC_013235.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 479431.Namu_0128.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACV76562 ; ACV76562 ; Namu_0128 .
    GeneIDi 8445708.
    KEGGi nml:Namu_0128.
    PATRICi 22657752. VBINakMul62011_0131.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci NMUL479431:GHQL-131-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700099 / DSM 44233 / JCM 9543 / Y-104Imported.

    Entry informationi

    Entry nameiC8XIX5_NAKMY
    AccessioniPrimary (citable) accession number: C8XIX5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 3, 2009
    Last sequence update: November 3, 2009
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3