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C8XIX5 (C8XIX5_NAKMY) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length831 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
C8XIX5 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: 1D4EC185FB362C25

FASTA83191,090
        10         20         30         40         50         60 
MAADSATVEV DGHRIALTHL RKVLYPASGT TKSEVIAYFA EVAHAMIPHL ADRPVTRKRW 

        70         80         90        100        110        120 
PDGVTTAPFF HKDLPKGTPS WVPRRTIRHS DGPKDYPLVD SPATLAWLGQ IAALELHVPQ 

       130        140        150        160        170        180 
WTFGSAAASV AGGDGEITEA VFDAVHPNRL VFDLDPGPGV ELVDCAHVAR AVRERMGGAA 

       190        200        210        220        230        240 
LVPVTSGSKG IHLYAWLDGS LTSDDASAYA REIAEAIEQD MPDLVVSRMA KSLRRGKVFI 

       250        260        270        280        290        300 
DWSQNNGSKT TIAPYSLRGR EHPTVAAPRT WEELADPELR HLEYTEVLEL LAAAPDPMQG 

       310        320        330        340        350        360 
LEDGDNDGAE TRGGSRRRGR GPDTKLDTYR SMRSADKTPE PVPEPGLLPQ GDDDTFVIQE 

       370        380        390        400        410        420 
HHARRLHYDF RLERDGVLVS WAVPKGVPES TGRNHLAVHT EDHPMDYADF AGEIPHGEYG 

       430        440        450        460        470        480 
GGTVSIWDRG TYATEKWRED EVIIVLHGGK ARGRYALIRT GGKNWLMHRM KDQSPQPKQY 

       490        500        510        520        530        540 
DDHRPATPTA PVTARPAPAR STRPEPPKDL RPMLATAGSV EDVADERRWR FEGKWDGIRA 

       550        560        570        580        590        600 
IATVGPSGLT LRSRLGNDVT PTYPELAVLA ELLDGHSAVL DGEIVALQDG RTSFHEMQKR 

       610        620        630        640        650        660 
MNVQRARDVA RVMRDVPVQF WIFDVLNLDG ISLLDKRYDD RRRILEALPL TGGVCLVPPQ 

       670        680        690        700        710        720 
LAGPARDALR GSADRQWEGI VAKLGDSTYQ PGRRSHSWLK IKNFLDLEVV VVGWSPGTGR 

       730        740        750        760        770        780 
REGTVGALLL AVPDGAGGLR YAGKVGTGFT DAILDQLMQA LAPLRADRSA VADTIPRADA 

       790        800        810        820        830 
AGAIWVRPEL VGEVKYGQWT PERRLRATSW RGLRPDKTVA DLIAGSAPPP S 

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References

[1]"The complete genome of Nakamurella multipartita DSM 44233."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Sims D., Meincke L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700099 / DSM 44233 / JCM 9543 / Y-104.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001737 Genomic DNA. Translation: ACV76562.1.
RefSeqYP_003199551.1. NC_013235.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING479431.Namu_0128.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV76562; ACV76562; Namu_0128.
GeneID8445708.
KEGGnml:Namu_0128.
PATRIC22657752. VBINakMul62011_0131.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASKGIHLY.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycNMUL479431:GHQL-131-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC8XIX5_NAKMY
AccessionPrimary (citable) accession number: C8XIX5
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: May 14, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)