C8XIX5 (C8XIX5_NAKMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA polymerase LigD, polymerase domain protein EMBL ACV76562.1

Gene names

Ordered Locus Names:

Namu_0128

Organism

Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) (Microsphaera multipartita) [Complete proteome] [HAMAP] EMBL ACV76562.1

Taxonomic identifier

479431 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Nakamurellaceae › Nakamurella › Nakamurella multipartita

Protein attributes

Sequence length	831 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C8XIX5 [UniParc]. Last modified November 3, 2009. Version 1. Checksum: 1D4EC185FB362C25	FASTA	831	91,090
	10 20 30 40 50 60 MAADSATVEV DGHRIALTHL RKVLYPASGT TKSEVIAYFA EVAHAMIPHL ADRPVTRKRW 70 80 90 100 110 120 PDGVTTAPFF HKDLPKGTPS WVPRRTIRHS DGPKDYPLVD SPATLAWLGQ IAALELHVPQ 130 140 150 160 170 180 WTFGSAAASV AGGDGEITEA VFDAVHPNRL VFDLDPGPGV ELVDCAHVAR AVRERMGGAA 190 200 210 220 230 240 LVPVTSGSKG IHLYAWLDGS LTSDDASAYA REIAEAIEQD MPDLVVSRMA KSLRRGKVFI 250 260 270 280 290 300 DWSQNNGSKT TIAPYSLRGR EHPTVAAPRT WEELADPELR HLEYTEVLEL LAAAPDPMQG 310 320 330 340 350 360 LEDGDNDGAE TRGGSRRRGR GPDTKLDTYR SMRSADKTPE PVPEPGLLPQ GDDDTFVIQE 370 380 390 400 410 420 HHARRLHYDF RLERDGVLVS WAVPKGVPES TGRNHLAVHT EDHPMDYADF AGEIPHGEYG 430 440 450 460 470 480 GGTVSIWDRG TYATEKWRED EVIIVLHGGK ARGRYALIRT GGKNWLMHRM KDQSPQPKQY 490 500 510 520 530 540 DDHRPATPTA PVTARPAPAR STRPEPPKDL RPMLATAGSV EDVADERRWR FEGKWDGIRA 550 560 570 580 590 600 IATVGPSGLT LRSRLGNDVT PTYPELAVLA ELLDGHSAVL DGEIVALQDG RTSFHEMQKR 610 620 630 640 650 660 MNVQRARDVA RVMRDVPVQF WIFDVLNLDG ISLLDKRYDD RRRILEALPL TGGVCLVPPQ 670 680 690 700 710 720 LAGPARDALR GSADRQWEGI VAKLGDSTYQ PGRRSHSWLK IKNFLDLEVV VVGWSPGTGR 730 740 750 760 770 780 REGTVGALLL AVPDGAGGLR YAGKVGTGFT DAILDQLMQA LAPLRADRSA VADTIPRADA 790 800 810 820 830 AGAIWVRPEL VGEVKYGQWT PERRLRATSW RGLRPDKTVA DLIAGSAPPP S

References

[1]

"The complete genome of Nakamurella multipartita DSM 44233." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Sims D., Meincke L., Brettin T., Detter J.C., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Klenk H.-P., Eisen J.A. Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700099 / DSM 44233 / JCM 9543 / Y-104.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001737 Genomic DNA. Translation: ACV76562.1.
RefSeq	YP_003199551.1. NC_013235.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	479431.Namu_0128.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACV76562; ACV76562; Namu_0128.
GeneID	8445708.
KEGG	nml:Namu_0128.
PATRIC	22657752. VBINakMul62011_0131.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	SGSKGIH.
ProtClustDB	PRK09632.
Enzyme and pathway databases
BioCyc	NMUL479431:GHQL-131-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C8XIX5_NAKMY

Accession

Primary (citable) accession number: C8XIX5

Entry history

Integrated into UniProtKB/TrEMBL:	November 3, 2009
Last sequence update:	November 3, 2009
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)