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C8XDB3 (C8XDB3_NAKMY) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length468 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
C8XDB3 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: FCFB7238F8B59EAA

FASTA46851,412
        10         20         30         40         50         60 
MALHTGSSEP THPPHTNPMA TLASPAVGDA FALPEISLNE DPVPPDIAYQ LIREELLLDG 

        70         80         90        100        110        120 
SARLNLATFV TTWMEPQAKQ LMSDCADKNM IDKDEYPQTA EIERRCVGII ADLWHAPSPD 

       130        140        150        160        170        180 
DATGCSTTGS SEACMLAGMA LKRRWEAKVR AEGGDLNVRK PNLVMGANVQ VCWEKFCRYW 

       190        200        210        220        230        240 
DVEPKIVPME GERFHLDADG AVAAVDENSI GVVAILGSTF DGSYEPVAEI AAALDKLAAS 

       250        260        270        280        290        300 
GGPDVPVHVD GASGGMIAPF LDPDLEWDFR LPRVSSINTS GHKYGLVYPG VGWVVWRDKD 

       310        320        330        340        350        360 
HLPDELVFNV NYLGGNMPTF ALNFSRPGSE VIAQYYCFFR LGRSGYVDVQ QASRNVAMNL 

       370        380        390        400        410        420 
AEQIGELPEF RLITKGDQLP VFAFTTSESV TGWDVFALSR RMRERGWQVP AYTFPEHRED 

       430        440        450        460 
LAVLRIVVRN GFSQDMAHLF FQELKGAVQS LNEESTSAAM SGPSGFRH 

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References

[1]"The complete genome of Nakamurella multipartita DSM 44233."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Sims D., Meincke L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700099 / DSM 44233 / JCM 9543 / Y-104.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001737 Genomic DNA. Translation: ACV81603.1.
RefSeqYP_003204592.1. NC_013235.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING479431.Namu_5339.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV81603; ACV81603; Namu_5339.
GeneID8450972.
KEGGnml:Namu_5339.
PATRIC22668378. VBINakMul62011_5395.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAIADLWNA.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycNMUL479431:GHQL-5380-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC8XDB3_NAKMY
AccessionPrimary (citable) accession number: C8XDB3
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: November 13, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)