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C8X9G9 (C8X9G9_NAKMY) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length354 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACV77237.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
C8X9G9 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: FFB539DFD9A8204C

FASTA35439,662
        10         20         30         40         50         60 
MQLPVMPPVA PMLAKSVPDI PTGELSYEPK WDGFRSIVFR DGDEVEIGSR NEKPMTRYFP 

        70         80         90        100        110        120 
ELVEAIKANL PPRCVIDGEI VVIVGDRLEF EVLQQRIHPA ASRVRMLAEQ TPASFVGFDL 

       130        140        150        160        170        180 
LALGDTDYTG RPFAERRAAL EQAMAGAAAP VHLTPATRDP ALAAEWFEQF EGAGLDGVVA 

       190        200        210        220        230        240 
KPLTGTYQPD KRTMFKIKHQ RTADCVVAGY RVHKSGPDSI GSLLLGLYND AGDLASVGVI 

       250        260        270        280        290        300 
GAFPAARRKQ LFTELQPLVT TFDEHPWNWA KPDESGARTP RSSEYSRWNV GKDLSFIPLR 

       310        320        330        340        350 
PERVVEVRYE HMEGTRFRHT AQFNRWRPDR DPRSCTYEQL EEPVSYDLAD ILGR 

« Hide

References

[1]"The complete genome of Nakamurella multipartita DSM 44233."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Sims D., Meincke L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700099 / DSM 44233 / JCM 9543 / Y-104.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001737 Genomic DNA. Translation: ACV77237.1.
RefSeqYP_003200226.1. NC_013235.1.

3D structure databases

ProteinModelPortalC8X9G9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING479431.Namu_0826.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV77237; ACV77237; Namu_0826.
GeneID8446418.
KEGGnml:Namu_0826.
PATRIC22659188. VBINakMul62011_0838.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222508.
KOK01971.
OMAERTADCV.
OrthoDBEOG63NMFT.
ProtClustDBPRK08224.

Enzyme and pathway databases

BioCycNMUL479431:GHQL-841-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC8X9G9_NAKMY
AccessionPrimary (citable) accession number: C8X9G9
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: April 16, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)