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C8X8S7 (C8X8S7_NAKMY) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1195 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 zinc ion per subunit By similarity. PIRSR PIRSR000381-1

Cobalamin By similarity. PIRSR PIRSR000381-2

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region823 – 8242Cobalamin-binding By similarity PIRSR PIRSR000381-2
Region1191 – 11922S-adenosyl-L-methionine binding By similarity PIRSR PIRSR000381-2

Sites

Metal binding2361Zinc By similarity PIRSR PIRSR000381-1
Metal binding3021Zinc By similarity PIRSR PIRSR000381-1
Metal binding3031Zinc By similarity PIRSR PIRSR000381-1
Metal binding7461Cobalt (cobalamin axial ligand) By similarity PIRSR PIRSR000381-1
Binding site9431S-adenosyl-L-methionine By similarity PIRSR PIRSR000381-2
Binding site11371S-adenosyl-L-methionine; via carbonyl oxygen By similarity PIRSR PIRSR000381-2
Binding site11411Cobalamin; via carbonyl oxygen By similarity PIRSR PIRSR000381-2

Sequences

Sequence LengthMass (Da)Tools
C8X8S7 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: C7220A4CDE9DB7B5

FASTA1,195129,392
        10         20         30         40         50         60 
MCYSTYSVPV TAAPRHPLLT ALSERVLVAD GAMGTMLQAQ DPSLDDFAGL EGCNEILNVT 

        70         80         90        100        110        120 
RPDIVRAVHR AYLEVGVDAI ETNTFGANLA NLAEYDIPDR IYELSRAGAA LARAEADEFS 

       130        140        150        160        170        180 
TPDHPRFVLG SVGPGTKLPT LGHAGYVTLR DAYQQEVAGL LDGGSDAIIV ETCQDLLQAK 

       190        200        210        220        230        240 
SAILAAKRAM TASGIVVPII VHVTVETTGT MLLGSEIGAA LTALEPLGVD YIGLNCATGP 

       250        260        270        280        290        300 
AEMSEHLRYL SRHATVGVSV MPNAGLPQLG PNGAVYPLSP AELAQALSGF VTEFGLGLVG 

       310        320        330        340        350        360 
GCCGTTPEHL RQVVEAVRDL RAAGRRPRRE PGLSSLYQAV PFQQDASVLM VGERTNANGS 

       370        380        390        400        410        420 
KAFREAMLAQ DWQACIEIAR AQTRDGAHVL DLNVDYVGRD GAADMASLAS RLATASTLPI 

       430        440        450        460        470        480 
MIDSTEPEVI GAGLEHLGGR SIVNSVNFED GDGPTSRYTR IMNLVAEHGA AVVALTIDEQ 

       490        500        510        520        530        540 
GQARTREHKV AIAERLIADL TGTWGMAESD IVVDCLTFPI ATGQEETRRD GIETIEAIRE 

       550        560        570        580        590        600 
LKRRHPDLHF TLGISNVSFG LNPAARQVLN SVFLAECTAA GLDSAIVHPS KILPMARIPE 

       610        620        630        640        650        660 
EQRTVALDLV WDRRREGYDP LQRVLEMFEG ATTAAGRATR AAEMAALPLD ERLQRRIIDG 

       670        680        690        700        710        720 
ERNGLEADLD EALTMRSALE IINDTLLEGM KTVGELFGSG AMQLPFVLTS AEVMKTAVAY 

       730        740        750        760        770        780 
LEPHMEKADS GGKGTIVLAT VKGDVHDIGK NLVDIILSNN GYSVVNLGIK QPIATILSAA 

       790        800        810        820        830        840 
QDSGADAIGM SGLLVKSTVI MKENLEEMNA RGIAEKYPVL LGGAALTRSY VENDLSSVFK 

       850        860        870        880        890        900 
GDVRYARDAF EGLRLMDGVM SRKRGLDPVA AAAETAKIAE RKARHERSKR IAEKRKAAAA 

       910        920        930        940        950        960 
EEEQVDVPAR SDVATDNPVP TPPFWGSRVI KGIALADYST MLDERATFMG QWGLRGSKGG 

       970        980        990       1000       1010       1020 
QGPSYEELVE KEGRPRLRYW LDRLHTDKVL EAAVVYGYFP CVSEGDDVVV LAEPTPDAAE 

      1030       1040       1050       1060       1070       1080 
LCRFTFPRQR RDRHLCLSDF YRSRESARQT GQVDVIAFTV VTMGQRIADF ANELFAANAY 

      1090       1100       1110       1120       1130       1140 
RDYLEVHGLS VQLTEALAEF WHQRIRSELV FPDGSNAAAE DSAEIEKFFD LEYRGARYSF 

      1150       1160       1170       1180       1190 
GYPACPDLTD QTKVMALLEP ERIGVELSEE FQLHPEQSTS ALVAHHPEAK YFAAR

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References

[1]"The complete genome of Nakamurella multipartita DSM 44233."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Sims D., Meincke L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700099 / DSM 44233 / JCM 9543 / Y-104.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001737 Genomic DNA. Translation: ACV79132.1.
RefSeqYP_003202121.1. NC_013235.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING479431.Namu_2786.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV79132; ACV79132; Namu_2786.
GeneID8448399.
KEGGnml:Namu_2786.
PATRIC22663158. VBINakMul62011_2803.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1410.
HOGENOMHOG000251408.
KOK00548.
OMANGSKAFR.
ProtClustDBCLSK872016.

Enzyme and pathway databases

BioCycNMUL479431:GHQL-2815-MONOMER.

Family and domain databases

Gene3D1.10.1240.10. 1 hit.
3.10.196.10. 1 hit.
3.20.20.20. 1 hit.
3.20.20.330. 1 hit.
3.40.50.280. 1 hit.
InterProIPR003759. Cbl-bd_cap.
IPR006158. Cobalamin-bd.
IPR011005. Dihydropteroate_synth-like.
IPR011822. MetH.
IPR000489. Pterin-binding.
IPR003726. S_MeTrfase.
IPR004223. VitB12-dep_Met_synth_activ_dom.
[Graphical view]
PfamPF02310. B12-binding. 1 hit.
PF02607. B12-binding_2. 1 hit.
PF02965. Met_synt_B12. 1 hit.
PF00809. Pterin_bind. 1 hit.
PF02574. S-methyl_trans. 1 hit.
[Graphical view]
PIRSFPIRSF000381. MetH. 1 hit.
SMARTSM01018. B12-binding_2. 1 hit.
[Graphical view]
SUPFAMSSF52242. Cbl-bd. 1 hit.
SSF51717. DHP_synth_like. 1 hit.
SSF56507. Met_synth_B12. 1 hit.
SSF47644. Met_synth_Cbl-bd. 1 hit.
SSF82282. S_methyl_trans. 1 hit.
TIGRFAMsTIGR02082. metH. 1 hit.
PROSITEPS50974. ADOMET_ACTIVATION. 1 hit.
PS51332. B12_BINDING. 1 hit.
PS51337. B12_BINDING_NTER. 1 hit.
PS50970. HCY. 1 hit.
PS50972. PTERIN_BINDING. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC8X8S7_NAKMY
AccessionPrimary (citable) accession number: C8X8S7
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info