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C8X2R0 (C8X2R0_DESRD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Riboflavin biosynthesis protein RibD PIRNR PIRNR006769
Gene names
Ordered Locus Names:Dret_1420
OrganismDesulfohalobium retbaense (strain DSM 5692) [Complete proteome] [HAMAP]
Taxonomic identifier485915 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfohalobiaceae › Desulfohalobium ›

Protein attributes

Sequence length384 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate By similarity. PIRNR PIRNR006769

Cofactor

Binds 1 zinc ion By similarity. PIRNR PIRNR006769

Pathway

Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP. PIRNR PIRNR006769

Sequence similarities

In the C-terminal section; belongs to the HTP reductase family. PIRNR PIRNR006769

In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family. PIRNR PIRNR006769

Sequences

Sequence LengthMass (Da)Tools
C8X2R0 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: 6647E78B01EACE54

FASTA38441,172
        10         20         30         40         50         60 
MQHAVELGET GFGRTAPNPC VGAVITRNGA VMAEGYHTAC GAPHAEVEAI AQARAAGVDL 

        70         80         90        100        110        120 
SECTLWVTLE PCNHHGRTPP CTKAIIEAGI RSVGIGTLDP NPHVGGGGTA FLRDQGVEVE 

       130        140        150        160        170        180 
VGILEPACRD LIADFLLWQQ EKRPGVLLKL AATLDGKIAT RSGHSAWVSG PEAREEVHGL 

       190        200        210        220        230        240 
RGRVDGVLVG GGTLRADNPR LTCRSERALN KQPLALVVTS RLPEAQDDLH LLRHRPQETI 

       250        260        270        280        290        300 
FWTTDDQSRT PQADALRALG CRIWDLPLTA SGMLDLRAGL THFFDQGLGH TILCEGGGRL 

       310        320        330        340        350        360 
ALALAEQGLA DRLRLYLAPK ILGDATAINL FSGRDELDMG QALPWRFTRS RQVGADMCLE 

       370        380 
LRPQTQQGAA RNGAPESIPA PRSR

« Hide

References

[1]"The complete chromosome of Desulfohalobium retbaense DSM 5692."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Munk A.C., Brettin T., Detter J.C., Han C., Tapia R. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 5692.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001734 Genomic DNA. Translation: ACV68707.1.
RefSeqYP_003198285.1. NC_013223.1.

3D structure databases

ProteinModelPortalC8X2R0.
ModBaseSearch...

Protein-protein interaction databases

STRING485915.Dret_1420.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV68707; ACV68707; Dret_1420.
GeneID8419249.
KEGGdrt:Dret_1420.
PATRIC21699868. VBIDesRet71890_1512.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0117.
HOGENOMHOG000257442.
KOK11752.
OMAVARGWHT.

Enzyme and pathway databases

BioCycDRET485915:GHRJ-1499-MONOMER.

Family and domain databases

Gene3D3.40.430.10. 1 hit.
InterProIPR016192. APOBEC/CMP_deaminase_Zn-bd.
IPR002125. CMP_dCMP_Zn-bd.
IPR016193. Cytidine_deaminase-like.
IPR024072. DHFR-like_dom.
IPR004794. Eubact_RibD.
IPR002734. RibDG_C.
[Graphical view]
PfamPF00383. dCMP_cyt_deam_1. 1 hit.
PF01872. RibD_C. 1 hit.
[Graphical view]
PIRSFPIRSF006769. RibD. 1 hit.
SUPFAMSSF53927. Cytidine_deaminase-like. 1 hit.
SSF53597. SSF53597. 1 hit.
TIGRFAMsTIGR00326. eubact_ribD. 1 hit.
PROSITEPS00903. CYT_DCMP_DEAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC8X2R0_DESRD
AccessionPrimary (citable) accession number: C8X2R0
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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