ID   C8WX38_ALIAD            Unreviewed;       305 AA.
AC   C8WX38;
DT   03-NOV-2009, integrated into UniProtKB/TrEMBL.
DT   03-NOV-2009, sequence version 1.
DT   27-MAR-2024, entry version 54.
DE   SubName: Full=DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:ACV58660.1};
GN   OrderedLocusNames=Aaci_1648 {ECO:0000313|EMBL:ACV58660.1};
OS   Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 /
OS   DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC 15652 / NCIMB 11725 /
OS   NRRL B-14509 / 104-IA) (Bacillus acidocaldarius).
OC   Bacteria; Bacillota; Bacilli; Bacillales; Alicyclobacillaceae;
OC   Alicyclobacillus.
OX   NCBI_TaxID=521098 {ECO:0000313|EMBL:ACV58660.1, ECO:0000313|Proteomes:UP000001917};
RN   [1] {ECO:0000313|Proteomes:UP000001917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 27009 / DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC
RC   15652 / NCIMB 11725 / NRRL B-14509 / 104-IA
RC   {ECO:0000313|Proteomes:UP000001917};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N.,
RA   Ovchinnikova G., Chertkov O., Sims D., Brettin T., Detter J.C., Han C.,
RA   Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P.,
RA   Woyke T., Wu D., Pukall R., Klenk H.-P., Eisen J.A.;
RT   "The complete chromosome of Alicyclobacillus acidocaldarius subsp.
RT   acidocaldarius DSM 446.";
RL   Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ACV58660.1, ECO:0000313|Proteomes:UP000001917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 27009 / DSM 446 / BCRC 14685 / JCM 5260 / KCTC 1825 / NBRC
RC   15652 / NCIMB 11725 / NRRL B-14509 / 104-IA
RC   {ECO:0000313|Proteomes:UP000001917};
RX   PubMed=21304673; DOI=10.4056/sigs.591104;
RA   Mavromatis K., Sikorski J., Lapidus A., Glavina Del Rio T., Copeland A.,
RA   Tice H., Cheng J.F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L.,
RA   Pitluck S., Ivanova N., Ovchinnikova G., Pati A., Chen A., Palaniappan K.,
RA   Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Meincke L.,
RA   Sims D., Chertkov O., Han C., Brettin T., Detter J.C., Wahrenburg C.,
RA   Rohde M., Pukall R., Goker M., Bristow J., Eisen J.A., Markowitz V.,
RA   Hugenholtz P., Klenk H.P., Kyrpides N.C.;
RT   "Complete genome sequence of Alicyclobacillus acidocaldarius type strain
RT   (104-IA).";
RL   Stand. Genomic Sci. 2:9-18(2010).
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DR   EMBL; CP001727; ACV58660.1; -; Genomic_DNA.
DR   RefSeq; WP_012810965.1; NC_013205.1.
DR   AlphaFoldDB; C8WX38; -.
DR   STRING; 521098.Aaci_1648; -.
DR   KEGG; aac:Aaci_1648; -.
DR   eggNOG; COG3285; Bacteria.
DR   HOGENOM; CLU_008325_1_1_9; -.
DR   Proteomes; UP000001917; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR   Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   NCBIfam; TIGR02778; ligD_pol; 1.
DR   PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   PANTHER; PTHR42705:SF2; MULTIFUNCTIONAL NON-HOMOLOGOUS END JOINING DNA REPAIR PROTEIN LIGD; 1.
DR   Pfam; PF21686; LigD_Prim-Pol; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001917}.
FT   DOMAIN          25..274
FT                   /note="DNA ligase D polymerase"
FT                   /evidence="ECO:0000259|Pfam:PF21686"
SQ   SEQUENCE   305 AA;  34170 MW;  758367DE52AD41B2 CRC64;
     MKRHESPPTL THGDKIYFPA AGLCKRDYMT YLAQIGEHLV RHLRHRPVTL VRCPDGVAGR
     RFYQRHLPPH APPSLPRREV QGERPLIAIP DVETLLYYGN LGAIEFHAGL HLVQGPQAGC
     PTALTFDLDP SDPRDFERVR ELALCLREVL RGLGLDGVAK TTGASGLQVL VPLEEPLPYA
     VTRPVVNFVA AYCASRWPDL ATTERRVRHR GRRVYVDAPQ HGPTRTLIAA YSVRAVEKAL
     VSAPITWAEL EYGVSPDAFD LHVVPDRLER VGDWLELAAR HPASRVRAIH DALPPPWRQT
     RVRSV
//