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C8WR20 (C8WR20_ALIAD) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length441 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455 RuleBase RU000609 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455 RuleBase RU000610 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455 RuleBase RU000609

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1021 By similarity HAMAP-Rule MF_00455
Active site1051 By similarity HAMAP-Rule MF_00455
Metal binding2331Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2691Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2691Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2721Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2971Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3101Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3401Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
C8WR20 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: FE0920E34DE4394E

FASTA44150,094
        10         20         30         40         50         60 
MDVATYFPEV TRIAYEGKRS DNPLSFKYYN PDEIVLGKPM KEHLRFSVAY WHTFTLSGAD 

        70         80         90        100        110        120 
PFGLPNMIRP WDGATGMDLA KRRVEAAFEF MTKLGVEYFC FHDRDIAPEG DTLRETNRNL 

       130        140        150        160        170        180 
DEIVALIKEY MQSTGIKLLW NTQNLFSNPR FAHGAATAPD ADVFAYAAAQ VKKSLEIAKE 

       190        200        210        220        230        240 
LGAENYVFWG GREGYETLLN TDLKLELDNY ARLLQMAVDY ADEIGFTGQF LIEPKPKEPT 

       250        260        270        280        290        300 
KHQYDFDVQS GLAFLYHYGL KDRFKFNIEA NHATLAGHTF QHELRFARIH GLLGSVDANQ 

       310        320        330        340        350        360 
GDPLLGWDTD EFPTNLYETT LAMYEILLNG GLAPGGLNFD AKVRRASMTP IDLFYGHIAG 

       370        380        390        400        410        420 
MDSFARGLKV AAKLLEDRVF EREIEERYES YRTGIGKDIV EGRATLKSLE SYVIDKRVTA 

       430        440 
TRSGRQEVLL AKLNQYLLET E 

« Hide

References

[1]"The complete chromosome of Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Ovchinnikova G., Chertkov O., Sims D., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Pukall R., Klenk H.-P., Eisen J.A.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27009 / DSM 446 / 104-1A.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001727 Genomic DNA. Translation: ACV59189.1.
RefSeqYP_003185578.1. NC_013205.1.

3D structure databases

ProteinModelPortalC8WR20.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING521098.Aaci_2180.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV59189; ACV59189; Aaci_2180.
GeneID8425702.
KEGGaac:Aaci_2180.
PATRIC20847832. VBIAliAci73240_2146.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2115.
HOGENOMHOG000252293.
KOK01805.
OMALFHAHIG.
OrthoDBEOG62NX4R.

Enzyme and pathway databases

BioCycAACI521098:GCIO-2244-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC8WR20_ALIAD
AccessionPrimary (citable) accession number: C8WR20
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: June 11, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)