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C8WIH5

- C8WIH5_EGGLE

UniProt

C8WIH5 - C8WIH5_EGGLE

Protein
Submitted name:

DNA ligase D

Gene

Elen_1951

Organism
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (03 Nov 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciELEN479437:GHWY-1985-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Elen_1951Imported
    OrganismiEggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)Imported
    Taxonomic identifieri479437 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaCoriobacteridaeCoriobacterialesCoriobacterineaeCoriobacteriaceaeEggerthella
    ProteomesiUP000001377: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi479437.Elen_1951.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C8WIH5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTSPLDDYNR KRNFDRTAEP PGTAAPRDDG AAGGCDGRLR FAVQHHLASR    50
    DHYDLRLEWN GTLLSWAVPK GPSYNPRDKR LAVRVEDHPL DYRTFEGTIP 100
    QGEYGGGTVM LWDEGWWEPL VDVEQGLREG DLKFALHGHR LKGAWVLVHM 150
    KPKKGERDVN WLLIKEKDDY VRADAGIDGF ETSVRTGRTM DEIARGEDEA 200
    FAANPFDHVD VELAKLVSST PPGDNWLFEV KYDGYRIVAY VEGGRARLVT 250
    RNGNDYTRHF PAIARSLEDW AAGRAMVLDG ELVVTDEAGK TDFQALQNFL 300
    RDPSGKHPAY VAFDLLAFEG DDLRDRPLAE RKELLESLMS DAPDNLRYSV 350
    HVRGNGADSF RAACKQHLEG VVGKRADSPY RGVRNGDWIK LKCGNEREFV 400
    VGGYTQSAKR VRGISSLLLG QYEDGRLAYV GRVGSGLSEA TSRELLAAFE 450
    GLERPDAPFA DAPKPRPGER VVWLDPQTIV QVKFAEWTED GLLRHPSYQG 500
    IRTDKDPRDV QREPASEPDE QTPDRLERPM NSDNEKNGEL RIDGVRITNP 550
    GKLLFEDPPI TKEDVVRYYA SMADRMLPYA SGRILSIVRC PRGADSACFF 600
    KKHPGPSTPG VRTVDIPTSS GDEEPYFYVE DAVGLVSEAQ MDTLEFHLWG 650
    SRVDTLEQPD MMVFDLDPDK GLGLEQVRRG VRDLKGILDE LGLKSFLKTS 700
    GGKGYHVVLP FQPAASWDAF HDFARRTAQV MAEKWPDRYT SNVRLAKRTG 750
    KVFIDWMRNG RGATSIAPYS LRARSGARVS MPLSWEELDE AAPDAFTMHD 800
    ALARIEGDDP WDGYFDVDQA LE 822
    Length:822
    Mass (Da):92,216
    Last modified:November 3, 2009 - v1
    Checksum:i7DD629E80A1943D8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001726 Genomic DNA. Translation: ACV55915.1.
    RefSeqiWP_015760857.1. NC_013204.1.
    YP_003182304.1. NC_013204.1.

    Genome annotation databases

    EnsemblBacteriaiACV55915; ACV55915; Elen_1951.
    GeneIDi8416260.
    KEGGiele:Elen_1951.
    PATRICi21844645. VBIEggLen106823_2018.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001726 Genomic DNA. Translation: ACV55915.1 .
    RefSeqi WP_015760857.1. NC_013204.1.
    YP_003182304.1. NC_013204.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 479437.Elen_1951.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACV55915 ; ACV55915 ; Elen_1951 .
    GeneIDi 8416260.
    KEGGi ele:Elen_1951.
    PATRICi 21844645. VBIEggLen106823_2018.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci ELEN479437:GHWY-1985-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255Imported.

    Entry informationi

    Entry nameiC8WIH5_EGGLE
    AccessioniPrimary (citable) accession number: C8WIH5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 3, 2009
    Last sequence update: November 3, 2009
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3