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C8WIH5

- C8WIH5_EGGLE

UniProt

C8WIH5 - C8WIH5_EGGLE

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Protein
Submitted name:

DNA ligase D

Gene

Elen_1951

Organism
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciELEN479437:GHWY-1985-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Elen_1951Imported
OrganismiEggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)Imported
Taxonomic identifieri479437 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCoriobacteridaeCoriobacterialesCoriobacterineaeCoriobacteriaceaeEggerthella
ProteomesiUP000001377: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi479437.Elen_1951.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C8WIH5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSPLDDYNR KRNFDRTAEP PGTAAPRDDG AAGGCDGRLR FAVQHHLASR
60 70 80 90 100
DHYDLRLEWN GTLLSWAVPK GPSYNPRDKR LAVRVEDHPL DYRTFEGTIP
110 120 130 140 150
QGEYGGGTVM LWDEGWWEPL VDVEQGLREG DLKFALHGHR LKGAWVLVHM
160 170 180 190 200
KPKKGERDVN WLLIKEKDDY VRADAGIDGF ETSVRTGRTM DEIARGEDEA
210 220 230 240 250
FAANPFDHVD VELAKLVSST PPGDNWLFEV KYDGYRIVAY VEGGRARLVT
260 270 280 290 300
RNGNDYTRHF PAIARSLEDW AAGRAMVLDG ELVVTDEAGK TDFQALQNFL
310 320 330 340 350
RDPSGKHPAY VAFDLLAFEG DDLRDRPLAE RKELLESLMS DAPDNLRYSV
360 370 380 390 400
HVRGNGADSF RAACKQHLEG VVGKRADSPY RGVRNGDWIK LKCGNEREFV
410 420 430 440 450
VGGYTQSAKR VRGISSLLLG QYEDGRLAYV GRVGSGLSEA TSRELLAAFE
460 470 480 490 500
GLERPDAPFA DAPKPRPGER VVWLDPQTIV QVKFAEWTED GLLRHPSYQG
510 520 530 540 550
IRTDKDPRDV QREPASEPDE QTPDRLERPM NSDNEKNGEL RIDGVRITNP
560 570 580 590 600
GKLLFEDPPI TKEDVVRYYA SMADRMLPYA SGRILSIVRC PRGADSACFF
610 620 630 640 650
KKHPGPSTPG VRTVDIPTSS GDEEPYFYVE DAVGLVSEAQ MDTLEFHLWG
660 670 680 690 700
SRVDTLEQPD MMVFDLDPDK GLGLEQVRRG VRDLKGILDE LGLKSFLKTS
710 720 730 740 750
GGKGYHVVLP FQPAASWDAF HDFARRTAQV MAEKWPDRYT SNVRLAKRTG
760 770 780 790 800
KVFIDWMRNG RGATSIAPYS LRARSGARVS MPLSWEELDE AAPDAFTMHD
810 820
ALARIEGDDP WDGYFDVDQA LE
Length:822
Mass (Da):92,216
Last modified:November 3, 2009 - v1
Checksum:i7DD629E80A1943D8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001726 Genomic DNA. Translation: ACV55915.1.
RefSeqiWP_015760857.1. NC_013204.1.
YP_003182304.1. NC_013204.1.

Genome annotation databases

EnsemblBacteriaiACV55915; ACV55915; Elen_1951.
GeneIDi8416260.
KEGGiele:Elen_1951.
PATRICi21844645. VBIEggLen106823_2018.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001726 Genomic DNA. Translation: ACV55915.1 .
RefSeqi WP_015760857.1. NC_013204.1.
YP_003182304.1. NC_013204.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 479437.Elen_1951.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACV55915 ; ACV55915 ; Elen_1951 .
GeneIDi 8416260.
KEGGi ele:Elen_1951.
PATRICi 21844645. VBIEggLen106823_2018.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ELEN479437:GHWY-1985-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255Imported.

Entry informationi

Entry nameiC8WIH5_EGGLE
AccessioniPrimary (citable) accession number: C8WIH5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: October 1, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3