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Protein
Submitted name:

DNA ligase D

Gene

Elen_1951

Organism
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciELEN479437:GHWY-1985-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Elen_1951Imported
OrganismiEggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) (Eubacterium lentum)Imported
Taxonomic identifieri479437 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCoriobacteriiaEggerthellalesEggerthellaceaeEggerthella
ProteomesiUP000001377 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi479437.Elen_1951.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C8WIH5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSPLDDYNR KRNFDRTAEP PGTAAPRDDG AAGGCDGRLR FAVQHHLASR
60 70 80 90 100
DHYDLRLEWN GTLLSWAVPK GPSYNPRDKR LAVRVEDHPL DYRTFEGTIP
110 120 130 140 150
QGEYGGGTVM LWDEGWWEPL VDVEQGLREG DLKFALHGHR LKGAWVLVHM
160 170 180 190 200
KPKKGERDVN WLLIKEKDDY VRADAGIDGF ETSVRTGRTM DEIARGEDEA
210 220 230 240 250
FAANPFDHVD VELAKLVSST PPGDNWLFEV KYDGYRIVAY VEGGRARLVT
260 270 280 290 300
RNGNDYTRHF PAIARSLEDW AAGRAMVLDG ELVVTDEAGK TDFQALQNFL
310 320 330 340 350
RDPSGKHPAY VAFDLLAFEG DDLRDRPLAE RKELLESLMS DAPDNLRYSV
360 370 380 390 400
HVRGNGADSF RAACKQHLEG VVGKRADSPY RGVRNGDWIK LKCGNEREFV
410 420 430 440 450
VGGYTQSAKR VRGISSLLLG QYEDGRLAYV GRVGSGLSEA TSRELLAAFE
460 470 480 490 500
GLERPDAPFA DAPKPRPGER VVWLDPQTIV QVKFAEWTED GLLRHPSYQG
510 520 530 540 550
IRTDKDPRDV QREPASEPDE QTPDRLERPM NSDNEKNGEL RIDGVRITNP
560 570 580 590 600
GKLLFEDPPI TKEDVVRYYA SMADRMLPYA SGRILSIVRC PRGADSACFF
610 620 630 640 650
KKHPGPSTPG VRTVDIPTSS GDEEPYFYVE DAVGLVSEAQ MDTLEFHLWG
660 670 680 690 700
SRVDTLEQPD MMVFDLDPDK GLGLEQVRRG VRDLKGILDE LGLKSFLKTS
710 720 730 740 750
GGKGYHVVLP FQPAASWDAF HDFARRTAQV MAEKWPDRYT SNVRLAKRTG
760 770 780 790 800
KVFIDWMRNG RGATSIAPYS LRARSGARVS MPLSWEELDE AAPDAFTMHD
810 820
ALARIEGDDP WDGYFDVDQA LE
Length:822
Mass (Da):92,216
Last modified:November 3, 2009 - v1
Checksum:i7DD629E80A1943D8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001726 Genomic DNA. Translation: ACV55915.1.
RefSeqiWP_015760857.1. NC_013204.1.
YP_003182304.1. NC_013204.1.

Genome annotation databases

EnsemblBacteriaiACV55915; ACV55915; Elen_1951.
KEGGiele:Elen_1951.
PATRICi21844645. VBIEggLen106823_2018.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001726 Genomic DNA. Translation: ACV55915.1.
RefSeqiWP_015760857.1. NC_013204.1.
YP_003182304.1. NC_013204.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi479437.Elen_1951.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACV55915; ACV55915; Elen_1951.
KEGGiele:Elen_1951.
PATRICi21844645. VBIEggLen106823_2018.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciELEN479437:GHWY-1985-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255Imported.

Entry informationi

Entry nameiC8WIH5_EGGLE
AccessioniPrimary (citable) accession number: C8WIH5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: June 24, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.