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C8WBE0

- C8WBE0_ZYMMN

UniProt

C8WBE0 - C8WBE0_ZYMMN

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Protein
tRNA pseudouridine synthase A
Gene
truA, Za10_0476
Organism
Zymomonas mobilis subsp. mobilis (strain NCIB 11163)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs By similarity.UniRule annotationSAAS annotations

Catalytic activityi

tRNA uridine(38-40) = tRNA pseudouridine(38-40).UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei52 – 521Nucleophile By similarityUniRule annotation
Binding sitei111 – 1111Substrate By similarityUniRule annotation

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. pseudouridine synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Biological processi

tRNA processingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciZMOB622759:GI1C-590-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase AUniRule annotation (EC:5.4.99.12UniRule annotation)
Alternative name(s):
tRNA pseudouridine(38-40) synthase
tRNA pseudouridylate synthase I
tRNA-uridine isomerase I
Gene namesi
Name:truAUniRule annotation
Ordered Locus Names:Za10_0476Imported
OrganismiZymomonas mobilis subsp. mobilis (strain NCIB 11163)Imported
Taxonomic identifieri622759 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeZymomonas
ProteomesiUP000000319: Chromosome

Interactioni

Subunit structurei

Homodimer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi622759.Za10_0476.

Structurei

3D structure databases

ProteinModelPortaliC8WBE0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0101.
HOGENOMiHOG000248672.
KOiK06173.
OrthoDBiEOG6Z9B4R.

Family and domain databases

Gene3Di3.30.70.580. 1 hit.
3.30.70.660. 1 hit.
HAMAPiMF_00171. TruA.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR001406. PsdUridine_synth_TruA.
IPR020097. PsdUridine_synth_TruA_a/b_dom.
IPR020095. PsdUridine_synth_TruA_C.
IPR020094. PsdUridine_synth_TruA_N.
[Graphical view]
PANTHERiPTHR11142. PTHR11142. 1 hit.
PfamiPF01416. PseudoU_synth_1. 2 hits.
[Graphical view]
PIRSFiPIRSF001430. tRNA_psdUrid_synth. 1 hit.
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00071. hisT_truA. 1 hit.

Sequencei

Sequence statusi: Complete.

C8WBE0-1 [UniParc]FASTAAdd to Basket

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MNRYRLTVEF DGRNFMGWQR QKHGATIQGS IEEAGASIAG QPTPVQAAGR    50
TDAGVHGLAM TAHIDVARDF TPFRLMEALN ARLKPRPIAI LSCEQVDPEW 100
HARFSCIGRR YLYRIINRRP PLTLEAGRAW HVIKPLDAET MDIAAKRLIG 150
LHDFTTFRSV HCQSKSPVKT LDHLDVRRIG DQIEITAAAR SFLHHQVRSM 200
VGCLVLVGQG QWTADDMTTA LEARNRAALG FNAPPDGLYF TQAIY 245
Length:245
Mass (Da):27,412
Last modified:November 3, 2009 - v1
Checksum:i6DE58C360928D760
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001722 Genomic DNA. Translation: ACV75026.1.
RefSeqiYP_003225610.1. NC_013355.1.

Genome annotation databases

EnsemblBacteriaiACV75026; ACV75026; Za10_0476.
GeneIDi8471570.
KEGGizmn:Za10_0476.
PATRICi24154002. VBIZymMob135463_0532.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001722 Genomic DNA. Translation: ACV75026.1 .
RefSeqi YP_003225610.1. NC_013355.1.

3D structure databases

ProteinModelPortali C8WBE0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 622759.Za10_0476.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACV75026 ; ACV75026 ; Za10_0476 .
GeneIDi 8471570.
KEGGi zmn:Za10_0476.
PATRICi 24154002. VBIZymMob135463_0532.

Phylogenomic databases

eggNOGi COG0101.
HOGENOMi HOG000248672.
KOi K06173.
OrthoDBi EOG6Z9B4R.

Enzyme and pathway databases

BioCyci ZMOB622759:GI1C-590-MONOMER.

Family and domain databases

Gene3Di 3.30.70.580. 1 hit.
3.30.70.660. 1 hit.
HAMAPi MF_00171. TruA.
InterProi IPR020103. PsdUridine_synth_cat_dom.
IPR001406. PsdUridine_synth_TruA.
IPR020097. PsdUridine_synth_TruA_a/b_dom.
IPR020095. PsdUridine_synth_TruA_C.
IPR020094. PsdUridine_synth_TruA_N.
[Graphical view ]
PANTHERi PTHR11142. PTHR11142. 1 hit.
Pfami PF01416. PseudoU_synth_1. 2 hits.
[Graphical view ]
PIRSFi PIRSF001430. tRNA_psdUrid_synth. 1 hit.
SUPFAMi SSF55120. SSF55120. 1 hit.
TIGRFAMsi TIGR00071. hisT_truA. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163."
    Kouvelis V.N., Saunders E., Brettin T.S., Bruce D., Detter C., Han C., Typas M.A., Pappas K.M.
    J. Bacteriol. 191:7140-7141(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NCIB 11163.

Entry informationi

Entry nameiC8WBE0_ZYMMN
AccessioniPrimary (citable) accession number: C8WBE0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: June 11, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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