C8W0F4 (C8W0F4_DESAS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L20 HAMAP-Rule MF_00382 RuleBase RU000560

Gene names

Name:	rplT HAMAP-Rule MF_00382
Ordered Locus Names:	Dtox_2398

Organism

Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) [Complete proteome] [HAMAP] EMBL ACV63209.1

Taxonomic identifier

485916 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfotomaculum › Desulfotomaculum acetoxidans

Protein attributes

Sequence length	118 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity. HAMAP-Rule MF_00382 RuleBase RU000560
Sequence similarities	Belongs to the ribosomal protein L20P family. HAMAP-Rule MF_00382 RuleBase RU000560

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_00382 RuleBase RU000560
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_00382 RuleBase RU000560 EMBL ACV63209.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	ribosomal large subunit assembly Inferred from electronic annotation. Source: HAMAP translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C8W0F4 [UniParc]. Last modified November 3, 2009. Version 1. Checksum: 3BD87B95C87E6EE2	FASTA	118	13,585
	10 20 30 40 50 60 MSRVKSGVTR RKRHKKILKL AKGYRGSRSK LFRVANQSVM KALSYAYRDR KARKRDFRRL 70 80 90 100 110 WIARINAAAR TNGLSYNKFM NGLKQAGVEV NRKMLAELAV NDNQSFVQLV QIAKSKLG

References

[1]

"Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575)." Spring S., Lapidus A., Schroder M., Gleim D., Sims D., Meincke L., Glavina Del Rio T., Tice H., Copeland A., Cheng J.F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K. , Mikhailova N., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Saunders E., Brettin T., Detter J.C., Goker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Han C. Stand. Genomic Sci. 1:242-253(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49208 / DSM 771 / VKM B-1644.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001720 Genomic DNA. Translation: ACV63209.1.
RefSeq	YP_003191832.1. NC_013216.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	485916.Dtox_2398.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACV63209; ACV63209; Dtox_2398.
GeneID	8429382.
KEGG	dae:Dtox_2398.
PATRIC	21721659. VBIDesAce42372_2439.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0292.
HOGENOM	HOG000035046.
KO	K02887.
OMA	GRRKNVW.
Enzyme and pathway databases
BioCyc	DACE485916:GHUF-2463-MONOMER.
Family and domain databases
HAMAP	MF_00382. Ribosomal_L20.
InterPro	IPR005813. Ribosomal_L20. [Graphical view]
PANTHER	PTHR10986. PTHR10986. 1 hit.
Pfam	PF00453. Ribosomal_L20. 1 hit. [Graphical view]
PRINTS	PR00062. RIBOSOMALL20.
TIGRFAMs	TIGR01032. rplT_bact. 1 hit.
PROSITE	PS00937. RIBOSOMAL_L20. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C8W0F4_DESAS

Accession

Primary (citable) accession number: C8W0F4

Entry history

Integrated into UniProtKB/TrEMBL:	November 3, 2009
Last sequence update:	November 3, 2009
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)