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C8UFG5 (C8UFG5_ECO1A) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length138 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Could be a nuclease that resolves Holliday junction intermediates in genetic recombination By similarity. HAMAP-Rule MF_00651 SAAS SAAS005227

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00651 SAAS SAAS005227.

Sequence similarities

Belongs to the YqgF HJR family. HAMAP-Rule MF_00651

Sequences

Sequence LengthMass (Da)Tools
C8UFG5 [UniParc].

Last modified November 3, 2009. Version 1.
Checksum: 8E627612AA2C1B05

FASTA13815,186
        10         20         30         40         50         60 
MSGTLLAFDF GTKSIGVAVG QRITGTARPL PAIKAQDGTP DWNLIERLLK EWQPDEIIVG 

        70         80         90        100        110        120 
LPLNMDGTEQ PLTARARKFA NRIHGRFGVE VKLHDERLST VEARSGLFEQ GGYRALNKGK 

       130 
VDSASAVIIL ESYFEQGY 

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References

[1]"Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 11128 / EHEC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP010960 Genomic DNA. Translation: BAI37487.1.
RefSeqYP_003236038.1. NC_013364.1.

3D structure databases

ProteinModelPortalC8UFG5.
SMRC8UFG5. Positions 1-138.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING585396.ECO111_3697.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAI37487; BAI37487; ECO111_3697.
GeneID8489731.
KEGGeoi:ECO111_3697.
PATRIC32110818. VBIEscCol143187_3823.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0816.
HOGENOMHOG000016954.
KOK07447.
OMAWTAQGIE.
OrthoDBEOG6N94FV.
ProtClustDBPRK00109.

Enzyme and pathway databases

BioCycECOL585396:GJCW-3828-MONOMER.

Family and domain databases

Gene3D3.30.420.140. 1 hit.
HAMAPMF_00651. HJR_YqgF.
InterProIPR005227. Resolv_Hlld_junc_YqgF-like.
IPR012337. RNaseH-like_dom.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamPF03652. UPF0081. 1 hit.
[Graphical view]
SMARTSM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
TIGRFAMsTIGR00250. RNAse_H_YqgF. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC8UFG5_ECO1A
AccessionPrimary (citable) accession number: C8UFG5
Entry history
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)