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C8UFG5

- C8UFG5_ECO1A

UniProt

C8UFG5 - C8UFG5_ECO1A

Protein

Putative Holliday junction resolvase

Gene

yqgF

Organism
Escherichia coli O111:H- (strain 11128 / EHEC)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (03 Nov 2009)
      Previous versions | rss
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    Functioni

    Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. nuclease activity Source: UniProtKB-KW
    2. nucleic acid binding Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: UniProtKB-KW
    2. DNA repair Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase, NucleaseUniRule annotationSAAS annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotationSAAS annotation, DNA repairUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciECOL585396:GJCW-3828-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative Holliday junction resolvaseUniRule annotation (EC:3.1.-.-UniRule annotation)
    Gene namesi
    Name:yqgFUniRule annotationImported
    Ordered Locus Names:ECO111_3697Imported
    OrganismiEscherichia coli O111:H- (strain 11128 / EHEC)Imported
    Taxonomic identifieri585396 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000001614: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi585396.ECO111_3697.

    Structurei

    3D structure databases

    ProteinModelPortaliC8UFG5.
    SMRiC8UFG5. Positions 1-138.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the YqgF HJR family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0816.
    HOGENOMiHOG000016954.
    KOiK07447.
    OMAiGVKIATQ.
    OrthoDBiEOG6N94FV.

    Family and domain databases

    Gene3Di3.30.420.140. 1 hit.
    HAMAPiMF_00651. HJR_YqgF.
    InterProiIPR005227. Resolv_Hlld_junc_YqgF-like.
    IPR012337. RNaseH-like_dom.
    IPR006641. YqgF/RNaseH-like_dom.
    [Graphical view]
    PfamiPF03652. UPF0081. 1 hit.
    [Graphical view]
    SMARTiSM00732. YqgFc. 1 hit.
    [Graphical view]
    SUPFAMiSSF53098. SSF53098. 1 hit.
    TIGRFAMsiTIGR00250. RNAse_H_YqgF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C8UFG5-1 [UniParc]FASTAAdd to Basket

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    MSGTLLAFDF GTKSIGVAVG QRITGTARPL PAIKAQDGTP DWNLIERLLK    50
    EWQPDEIIVG LPLNMDGTEQ PLTARARKFA NRIHGRFGVE VKLHDERLST 100
    VEARSGLFEQ GGYRALNKGK VDSASAVIIL ESYFEQGY 138
    Length:138
    Mass (Da):15,186
    Last modified:November 3, 2009 - v1
    Checksum:i8E627612AA2C1B05
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010960 Genomic DNA. Translation: BAI37487.1.
    RefSeqiYP_003236038.1. NC_013364.1.

    Genome annotation databases

    EnsemblBacteriaiBAI37487; BAI37487; ECO111_3697.
    GeneIDi8489731.
    KEGGieoi:ECO111_3697.
    PATRICi32110818. VBIEscCol143187_3823.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010960 Genomic DNA. Translation: BAI37487.1 .
    RefSeqi YP_003236038.1. NC_013364.1.

    3D structure databases

    ProteinModelPortali C8UFG5.
    SMRi C8UFG5. Positions 1-138.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 585396.ECO111_3697.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAI37487 ; BAI37487 ; ECO111_3697 .
    GeneIDi 8489731.
    KEGGi eoi:ECO111_3697.
    PATRICi 32110818. VBIEscCol143187_3823.

    Phylogenomic databases

    eggNOGi COG0816.
    HOGENOMi HOG000016954.
    KOi K07447.
    OMAi GVKIATQ.
    OrthoDBi EOG6N94FV.

    Enzyme and pathway databases

    BioCyci ECOL585396:GJCW-3828-MONOMER.

    Family and domain databases

    Gene3Di 3.30.420.140. 1 hit.
    HAMAPi MF_00651. HJR_YqgF.
    InterProi IPR005227. Resolv_Hlld_junc_YqgF-like.
    IPR012337. RNaseH-like_dom.
    IPR006641. YqgF/RNaseH-like_dom.
    [Graphical view ]
    Pfami PF03652. UPF0081. 1 hit.
    [Graphical view ]
    SMARTi SM00732. YqgFc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53098. SSF53098. 1 hit.
    TIGRFAMsi TIGR00250. RNAse_H_YqgF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
      Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
      Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 11128 / EHECImported.

    Entry informationi

    Entry nameiC8UFG5_ECO1A
    AccessioniPrimary (citable) accession number: C8UFG5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 3, 2009
    Last sequence update: November 3, 2009
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3