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C8UCW6

- C8UCW6_ECO1A

UniProt

C8UCW6 - C8UCW6_ECO1A

Protein
Submitted name:

Toxin of the YoeB-YefM toxin-antitoxin system

Gene

yoeB

Organism
Escherichia coli O111:H- (strain 11128 / EHEC)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. endonuclease activity Source: InterPro

    GO - Biological processi

    1. RNA catabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciECOL585396:GJCW-2829-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Toxin of the YoeB-YefM toxin-antitoxin systemImported
    Gene namesi
    Name:yoeBImported
    Ordered Locus Names:ECO111_2740Imported
    OrganismiEscherichia coli O111:H- (strain 11128 / EHEC)Imported
    Taxonomic identifieri585396 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000001614: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi585396.ECO111_2740.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4BYDX-ray3.35Y/Z1-84[»]
    ProteinModelPortaliC8UCW6.
    SMRiC8UCW6. Positions 1-84.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG4115.
    HOGENOMiHOG000216470.
    OMAiSWTDEAW.
    OrthoDBiEOG6KWZ5K.

    Family and domain databases

    InterProiIPR009614. YoeB.
    [Graphical view]
    PfamiPF06769. Plasmid_Txe. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    C8UCW6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH   50
    NLSGFWSRRI TEEHRLVYAV TDDSLLIAAC RYHY 84
    Length:84
    Mass (Da):10,216
    Last modified:November 3, 2009 - v1
    Checksum:iC043381C56DC2939
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010960 Genomic DNA. Translation: BAI36588.1.
    RefSeqiYP_003235139.1. NC_013364.1.

    Genome annotation databases

    EnsemblBacteriaiBAI36588; BAI36588; ECO111_2740.
    GeneIDi8488960.
    KEGGieoi:ECO111_2740.
    PATRICi32108794. VBIEscCol143187_2835.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010960 Genomic DNA. Translation: BAI36588.1 .
    RefSeqi YP_003235139.1. NC_013364.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4BYD X-ray 3.35 Y/Z 1-84 [» ]
    ProteinModelPortali C8UCW6.
    SMRi C8UCW6. Positions 1-84.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 585396.ECO111_2740.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAI36588 ; BAI36588 ; ECO111_2740 .
    GeneIDi 8488960.
    KEGGi eoi:ECO111_2740.
    PATRICi 32108794. VBIEscCol143187_2835.

    Phylogenomic databases

    eggNOGi COG4115.
    HOGENOMi HOG000216470.
    OMAi SWTDEAW.
    OrthoDBi EOG6KWZ5K.

    Enzyme and pathway databases

    BioCyci ECOL585396:GJCW-2829-MONOMER.

    Family and domain databases

    InterProi IPR009614. YoeB.
    [Graphical view ]
    Pfami PF06769. Plasmid_Txe. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02116. toxin_Txe_YoeB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
      Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
      Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 11128 / EHECImported.
    2. "YoeB-ribosome structure: a canonical RNase that requires the ribosome for its specific activity."
      Feng S., Chen Y., Kamada K., Wang H., Tang K., Wang M., Gao Y.G.
      Nucleic Acids Res. 41:9549-9556(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS).

    Entry informationi

    Entry nameiC8UCW6_ECO1A
    AccessioniPrimary (citable) accession number: C8UCW6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 3, 2009
    Last sequence update: November 3, 2009
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported

    External Data

    Dasty 3