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C8UCW6

- C8UCW6_ECO1A

UniProt

C8UCW6 - C8UCW6_ECO1A

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Protein
Submitted name:

Toxin of the YoeB-YefM toxin-antitoxin system

Gene

yoeB

Organism
Escherichia coli O111:H- (strain 11128 / EHEC)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. endonuclease activity Source: InterPro

GO - Biological processi

  1. RNA catabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciECOL585396:GJCW-2829-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Toxin of the YoeB-YefM toxin-antitoxin systemImported
Gene namesi
Name:yoeBImported
Ordered Locus Names:ECO111_2740Imported
OrganismiEscherichia coli O111:H- (strain 11128 / EHEC)Imported
Taxonomic identifieri585396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000001614: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi585396.ECO111_2740.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4BYDX-ray3.35Y/Z1-84[»]
ProteinModelPortaliC8UCW6.
SMRiC8UCW6. Positions 1-84.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4115.
HOGENOMiHOG000216470.
OMAiSWTDEAW.
OrthoDBiEOG6KWZ5K.

Family and domain databases

InterProiIPR009614. YoeB.
[Graphical view]
PfamiPF06769. Plasmid_Txe. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.

Sequencei

Sequence statusi: Complete.

C8UCW6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH
60 70 80
NLSGFWSRRI TEEHRLVYAV TDDSLLIAAC RYHY
Length:84
Mass (Da):10,216
Last modified:November 3, 2009 - v1
Checksum:iC043381C56DC2939
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010960 Genomic DNA. Translation: BAI36588.1.
RefSeqiYP_003235139.1. NC_013364.1.

Genome annotation databases

EnsemblBacteriaiBAI36588; BAI36588; ECO111_2740.
GeneIDi8488960.
KEGGieoi:ECO111_2740.
PATRICi32108794. VBIEscCol143187_2835.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010960 Genomic DNA. Translation: BAI36588.1 .
RefSeqi YP_003235139.1. NC_013364.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4BYD X-ray 3.35 Y/Z 1-84 [» ]
ProteinModelPortali C8UCW6.
SMRi C8UCW6. Positions 1-84.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 585396.ECO111_2740.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAI36588 ; BAI36588 ; ECO111_2740 .
GeneIDi 8488960.
KEGGi eoi:ECO111_2740.
PATRICi 32108794. VBIEscCol143187_2835.

Phylogenomic databases

eggNOGi COG4115.
HOGENOMi HOG000216470.
OMAi SWTDEAW.
OrthoDBi EOG6KWZ5K.

Enzyme and pathway databases

BioCyci ECOL585396:GJCW-2829-MONOMER.

Family and domain databases

InterProi IPR009614. YoeB.
[Graphical view ]
Pfami PF06769. Plasmid_Txe. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02116. toxin_Txe_YoeB. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
    Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
    Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 11128 / EHECImported.
  2. "YoeB-ribosome structure: a canonical RNase that requires the ribosome for its specific activity."
    Feng S., Chen Y., Kamada K., Wang H., Tang K., Wang M., Gao Y.G.
    Nucleic Acids Res. 41:9549-9556(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS).

Entry informationi

Entry nameiC8UCW6_ECO1A
AccessioniPrimary (citable) accession number: C8UCW6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: October 1, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteomeImported

External Data

Dasty 3