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Protein
Submitted name:

Toxin of the YoeB-YefM toxin-antitoxin system

Gene

yoeB

Organism
Escherichia coli O111:H- (strain 11128 / EHEC)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciECOL585396:GJCW-2829-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Toxin of the YoeB-YefM toxin-antitoxin systemImported
Gene namesi
Name:yoeBImported
Ordered Locus Names:ECO111_2740Imported
OrganismiEscherichia coli O111:H- (strain 11128 / EHEC)Imported
Taxonomic identifieri585396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000001614 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V8XX-ray3.35AY/AZ/CY/CZ1-84[»]
ProteinModelPortaliC8UCW6.
SMRiC8UCW6. Positions 1-84.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG4115.
HOGENOMiHOG000216470.
KOiK19158.
OMAiGEHRLVY.
OrthoDBiEOG6KWZ5K.

Family and domain databases

InterProiIPR009614. YoeB.
[Graphical view]
PfamiPF06769. Plasmid_Txe. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.

Sequencei

Sequence statusi: Complete.

C8UCW6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH
60 70 80
NLSGFWSRRI TEEHRLVYAV TDDSLLIAAC RYHY
Length:84
Mass (Da):10,216
Last modified:November 3, 2009 - v1
Checksum:iC043381C56DC2939
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010960 Genomic DNA. Translation: BAI36588.1.
RefSeqiWP_000767829.1. NC_013364.1.
YP_003235139.1. NC_013364.1.

Genome annotation databases

EnsemblBacteriaiBAI36588; BAI36588; ECO111_2740.
KEGGieoi:ECO111_2740.
PATRICi32108794. VBIEscCol143187_2835.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010960 Genomic DNA. Translation: BAI36588.1.
RefSeqiWP_000767829.1. NC_013364.1.
YP_003235139.1. NC_013364.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V8XX-ray3.35AY/AZ/CY/CZ1-84[»]
ProteinModelPortaliC8UCW6.
SMRiC8UCW6. Positions 1-84.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAI36588; BAI36588; ECO111_2740.
KEGGieoi:ECO111_2740.
PATRICi32108794. VBIEscCol143187_2835.

Phylogenomic databases

eggNOGiCOG4115.
HOGENOMiHOG000216470.
KOiK19158.
OMAiGEHRLVY.
OrthoDBiEOG6KWZ5K.

Enzyme and pathway databases

BioCyciECOL585396:GJCW-2829-MONOMER.

Family and domain databases

InterProiIPR009614. YoeB.
[Graphical view]
PfamiPF06769. Plasmid_Txe. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02116. toxin_Txe_YoeB. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
    Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
    Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 11128 / EHECImported.
  2. "YoeB-ribosome structure: a canonical RNase that requires the ribosome for its specific activity."
    Feng S., Chen Y., Kamada K., Wang H., Tang K., Wang M., Gao Y.G.
    Nucleic Acids Res. 41:9549-9556(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS).

Entry informationi

Entry nameiC8UCW6_ECO1A
AccessioniPrimary (citable) accession number: C8UCW6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: June 24, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.