Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Periplasmic binding protein for nickel NikA

Gene

nikA

Organism
Escherichia coli O103:H2 (strain 12009 / EHEC)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Periplasmic binding protein for nickel NikAImported
Gene namesi
Name:nikAImported
Ordered Locus Names:ECO103_4196Imported
OrganismiEscherichia coli O103:H2 (strain 12009 / EHEC)Imported
Taxonomic identifieri585395 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000959 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 22Sequence analysisAdd BLAST22
ChainiPRO_500299259923 – 524Sequence analysisAdd BLAST502

Structurei

3D structure databases

ProteinModelPortaliC8TY92.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 433SBP_bac_5InterPro annotationAdd BLAST366

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000125740.
KOiK15584.
OMAiFTRHEGY.

Family and domain databases

CDDicd08489. PBP2_NikA. 1 hit.
InterProiIPR011980. NikA_ABC_Ni-bd.
IPR030678. Peptide/Ni-bd.
IPR023765. SBP_5_CS.
IPR000914. SBP_5_dom.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
PIRSFiPIRSF002741. MppA. 1 hit.
TIGRFAMsiTIGR02294. nickel_nikA. 1 hit.
PROSITEiPS01040. SBP_BACTERIAL_5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C8TY92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSTLRRTLF ALLACASFIV HAAAPDEITT AWPVNVGPLN PHLYTPNQMF
60 70 80 90 100
AQSMVYEPLV KYQADGSVIP WLAKSWTHSE DGKTWTFTLR DDVKFSNGEP
110 120 130 140 150
FDAEAAAENF RAVLDNRQRH AWLELANQIV DVKALSKTEL QITLKSAYYP
160 170 180 190 200
FLQELALPRP FRFIAPSQFK NHETMNGIKA PIGTGPWILQ ESKLNQYDVF
210 220 230 240 250
VRNENYWGEK PAIKKITFNV IPDPTTRAVA FETGDIDLLY GNEGLLPLDT
260 270 280 290 300
FARFSQNPAY HTQLSQPIET VMLALNTAKA PTNELAVREA LNYAVNKKSL
310 320 330 340 350
IDNALYGTQQ VADTLFAPSV PYANLGLKPR QYDPQKAKAL LEKAGWTLPA
360 370 380 390 400
GKDIREKNGQ PLRIELSFIG TDALSKSMAE IIQADMRQIG ADVSLIGEEE
410 420 430 440 450
SSIYARQRDG RFGMIFHRTW GAPYDPHAFL SSMRVPSHAD FQAQQGLADK
460 470 480 490 500
PLIDKEIGEV LATHDETQRQ ALYRDILTRL HDEAVYLPIS YISMMVVSKP
510 520
ELGNIPYAPI ATEIPFEQIK PVKP
Length:524
Mass (Da):58,788
Last modified:November 3, 2009 - v1
Checksum:i3E2F79E86C106662
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010958 Genomic DNA. Translation: BAI32904.1.
RefSeqiWP_000953353.1. NC_013353.1.

Genome annotation databases

EnsemblBacteriaiBAI32904; BAI32904; ECO103_4196.
KEGGieoh:ECO103_4196.
PATRICi32100475. VBIEscCol146794_4385.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010958 Genomic DNA. Translation: BAI32904.1.
RefSeqiWP_000953353.1. NC_013353.1.

3D structure databases

ProteinModelPortaliC8TY92.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAI32904; BAI32904; ECO103_4196.
KEGGieoh:ECO103_4196.
PATRICi32100475. VBIEscCol146794_4385.

Phylogenomic databases

HOGENOMiHOG000125740.
KOiK15584.
OMAiFTRHEGY.

Family and domain databases

CDDicd08489. PBP2_NikA. 1 hit.
InterProiIPR011980. NikA_ABC_Ni-bd.
IPR030678. Peptide/Ni-bd.
IPR023765. SBP_5_CS.
IPR000914. SBP_5_dom.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
PIRSFiPIRSF002741. MppA. 1 hit.
TIGRFAMsiTIGR02294. nickel_nikA. 1 hit.
PROSITEiPS01040. SBP_BACTERIAL_5. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiC8TY92_ECO10
AccessioniPrimary (citable) accession number: C8TY92
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: November 2, 2016
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.