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Protein
Submitted name:

Periplasmic binding protein for nickel NikA

Gene

nikA

Organism
Escherichia coli O103:H2 (strain 12009 / EHEC)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. heme binding Source: InterPro
  2. nickel cation binding Source: InterPro

GO - Biological processi

  1. nickel cation transport Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciECOL585395:GJA9-4342-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Periplasmic binding protein for nickel NikAImported
Gene namesi
Name:nikAImported
Ordered Locus Names:ECO103_4196Imported
OrganismiEscherichia coli O103:H2 (strain 12009 / EHEC)Imported
Taxonomic identifieri585395 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000959 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi585395.ECO103_4196.

Structurei

3D structure databases

ProteinModelPortaliC8TY92.
SMRiC8TY92. Positions 25-523.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0747.
HOGENOMiHOG000125740.
KOiK15584.
OMAiANASKWA.
OrthoDBiEOG6KHFZ2.

Family and domain databases

InterProiIPR011980. NikA_ABC_Ni-bd.
IPR000914. SBP_5.
IPR023765. SBP_5_CS.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02294. nickel_nikA. 1 hit.
PROSITEiPS01040. SBP_BACTERIAL_5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C8TY92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSTLRRTLF ALLACASFIV HAAAPDEITT AWPVNVGPLN PHLYTPNQMF
60 70 80 90 100
AQSMVYEPLV KYQADGSVIP WLAKSWTHSE DGKTWTFTLR DDVKFSNGEP
110 120 130 140 150
FDAEAAAENF RAVLDNRQRH AWLELANQIV DVKALSKTEL QITLKSAYYP
160 170 180 190 200
FLQELALPRP FRFIAPSQFK NHETMNGIKA PIGTGPWILQ ESKLNQYDVF
210 220 230 240 250
VRNENYWGEK PAIKKITFNV IPDPTTRAVA FETGDIDLLY GNEGLLPLDT
260 270 280 290 300
FARFSQNPAY HTQLSQPIET VMLALNTAKA PTNELAVREA LNYAVNKKSL
310 320 330 340 350
IDNALYGTQQ VADTLFAPSV PYANLGLKPR QYDPQKAKAL LEKAGWTLPA
360 370 380 390 400
GKDIREKNGQ PLRIELSFIG TDALSKSMAE IIQADMRQIG ADVSLIGEEE
410 420 430 440 450
SSIYARQRDG RFGMIFHRTW GAPYDPHAFL SSMRVPSHAD FQAQQGLADK
460 470 480 490 500
PLIDKEIGEV LATHDETQRQ ALYRDILTRL HDEAVYLPIS YISMMVVSKP
510 520
ELGNIPYAPI ATEIPFEQIK PVKP
Length:524
Mass (Da):58,788
Last modified:November 3, 2009 - v1
Checksum:i3E2F79E86C106662
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010958 Genomic DNA. Translation: BAI32904.1.
RefSeqiYP_003224038.1. NC_013353.1.

Genome annotation databases

EnsemblBacteriaiBAI32904; BAI32904; ECO103_4196.
KEGGieoh:ECO103_4196.
PATRICi32100475. VBIEscCol146794_4385.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010958 Genomic DNA. Translation: BAI32904.1.
RefSeqiYP_003224038.1. NC_013353.1.

3D structure databases

ProteinModelPortaliC8TY92.
SMRiC8TY92. Positions 25-523.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi585395.ECO103_4196.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAI32904; BAI32904; ECO103_4196.
KEGGieoh:ECO103_4196.
PATRICi32100475. VBIEscCol146794_4385.

Phylogenomic databases

eggNOGiCOG0747.
HOGENOMiHOG000125740.
KOiK15584.
OMAiANASKWA.
OrthoDBiEOG6KHFZ2.

Enzyme and pathway databases

BioCyciECOL585395:GJA9-4342-MONOMER.

Family and domain databases

InterProiIPR011980. NikA_ABC_Ni-bd.
IPR000914. SBP_5.
IPR023765. SBP_5_CS.
[Graphical view]
PfamiPF00496. SBP_bac_5. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02294. nickel_nikA. 1 hit.
PROSITEiPS01040. SBP_BACTERIAL_5. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
    Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
    Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 12009 / EHECImported.

Entry informationi

Entry nameiC8TY92_ECO10
AccessioniPrimary (citable) accession number: C8TY92
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: April 1, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.