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Protein
Submitted name:

T3SS structure protein EscC

Gene

escC

Organism
Escherichia coli O103:H2 (strain 12009 / EHEC)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciECOL585395:GJA9-3752-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
T3SS structure protein EscCImported
Gene namesi
Name:escCImported
Ordered Locus Names:ECO103_3625Imported
OrganismiEscherichia coli O103:H2 (strain 12009 / EHEC)Imported
Taxonomic identifieri585395 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000959 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 512493Sequence analysisPRO_5002992573Add
BLAST

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini180 – 27596Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000245123.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiEOG6423BN.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C8TWN6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKISFFIFT ALFCCSAQAA PSSLEKRLGK NEYFIITKSS PVRAILNDFA
60 70 80 90 100
ANYSIPVFIS NSVNDDFSGE IKNEKPMKVL EKLSRLYHLT WYYDENILYI
110 120 130 140 150
YKTNEISRSI ITPTYLDIDS LLKYLRDTIS VNKNSCNVRK ITTFNSIEVR
160 170 180 190 200
GVPECIKYIT SLSESLDKEA QSKAKNKDVV RVFKLNYASA TDITYKYRDQ
210 220 230 240 250
NVVVPGVVSI LKTMASNGSL PSTGKGAVER NGNLFDNSVK ISADPRLNAV
260 270 280 290 300
VVKDREITMD IYRQLISELD IEQRQIEISV SIIDVDANDL QQLGVNWSGT
310 320 330 340 350
LNAGQGSIAF NSSTAQANLS SSVISNANNF MIRVNALQQN SKAKILSQPS
360 370 380 390 400
IITLNNMQAI LDKNVTFYTK VSGEKVASLE SITSGTLLRV TPRILDDNSN
410 420 430 440 450
SLTGKRRERV RLLLDIQDGN QSTNQSNAQD ASSILPEVQN SEMTTEATLS
460 470 480 490 500
AGESLLLGGF IQDKESSSKD GIPLLSDIPV IGNLFSSTTK QKHSVVRLFL
510
IKATPIKSAS SE
Length:512
Mass (Da):56,573
Last modified:November 3, 2009 - v1
Checksum:i03A0F2A42C9FD831
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010958 Genomic DNA. Translation: BAI32348.1.
RefSeqiWP_000723928.1. NC_013353.1.

Genome annotation databases

EnsemblBacteriaiBAI32348; BAI32348; ECO103_3625.
KEGGieoh:ECO103_3625.
PATRICi32099265. VBIEscCol146794_3789.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010958 Genomic DNA. Translation: BAI32348.1.
RefSeqiWP_000723928.1. NC_013353.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAI32348; BAI32348; ECO103_3625.
KEGGieoh:ECO103_3625.
PATRICi32099265. VBIEscCol146794_3789.

Phylogenomic databases

HOGENOMiHOG000245123.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiEOG6423BN.

Enzyme and pathway databases

BioCyciECOL585395:GJA9-3752-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli."
    Ogura Y., Ooka T., Iguchi A., Toh H., Asadulghani M., Oshima K., Kodama T., Abe H., Nakayama K., Kurokawa K., Tobe T., Hattori M., Hayashi T.
    Proc. Natl. Acad. Sci. U.S.A. 106:17939-17944(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 12009 / EHECImported.

Entry informationi

Entry nameiC8TWN6_ECO10
AccessioniPrimary (citable) accession number: C8TWN6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 3, 2009
Last sequence update: November 3, 2009
Last modified: December 9, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.