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C7RRL3 (C7RRL3_ACCPU) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulose-phosphate 3-epimerase PIRNR PIRNR001461
EC=5.1.3.1 PIRNR PIRNR001461
Gene names
Ordered Locus Names:CAP2UW1_1173 EMBL ACV34502.1
OrganismAccumulibacter phosphatis (strain UW-1) [Complete proteome] [HAMAP] EMBL ACV34502.1
Taxonomic identifier522306 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Candidatus Accumulibacter ›

Protein attributes

Sequence length229 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-ribulose 5-phosphate = D-xylulose 5-phosphate. PIRNR PIRNR001461

Cofactor

Binds 1 divalent metal cation per subunit. Active with Co2+, Mn2+ and Zn2+ By similarity. PIRSR PIRSR001461-2

Sequence similarities

Belongs to the ribulose-phosphate 3-epimerase family. PIRNR PIRNR001461

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region141 – 1444Substrate binding By similarity PIRSR PIRSR001461-3
Region200 – 2012Substrate binding By similarity PIRSR PIRSR001461-3

Sites

Active site341Proton acceptor By similarity PIRSR PIRSR001461-1
Active site1781Proton donor By similarity PIRSR PIRSR001461-1
Metal binding321Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding341Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding651Divalent metal cation By similarity PIRSR PIRSR001461-2
Metal binding1781Divalent metal cation By similarity PIRSR PIRSR001461-2
Binding site71Substrate By similarity PIRSR PIRSR001461-3
Binding site651Substrate By similarity PIRSR PIRSR001461-3
Binding site1801Substrate; via amide nitrogen By similarity PIRSR PIRSR001461-3

Sequences

Sequence LengthMass (Da)Tools
C7RRL3 [UniParc].

Last modified October 13, 2009. Version 1.
Checksum: 5933DED12AF46720

FASTA22924,605
        10         20         30         40         50         60 
MHVIAPSILS ADFARLGEEV VNVIAAGADW IHFDVMDNHY VPNLTIGPLV CAAIRPLTEA 

        70         80         90        100        110        120 
PIDVHLMVRP VDRIVPDFAK AGANIITFHP EASEHVDRTL ALIRENGCQS GLVFNPATPL 

       130        140        150        160        170        180 
DYMDYVMDKL DIVLLMSVNP GFGGQQFIAS TLAKLAAARA RIDAYERSSG RRIRLEVDGG 

       190        200        210        220 
VKIDNIAEIA RAGADAFVAG SAVFGAGRDS DANRYDTVIA ALRAQLGEI

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References

[1]"Complete sequence of chromosome of Candidatus Accumulibacter phosphatis clade IIA str. UW-1."
US DOE Joint Genome Institute
Martin H.G., Ivanova N., Kunin V., Warnecke F., Barry K., He S., Salamov A., Szeto E., Dalin E., Pangilinan J.L., Lapidus A., Lowry S., Kyrpides N.C., McMahon K.D., Hugenholtz P.
Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: UW-1 EMBL ACV34502.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001715 Genomic DNA. Translation: ACV34502.1.
RefSeqYP_003166431.1. NC_013194.1.

3D structure databases

ProteinModelPortalC7RRL3.
ModBaseSearch...

Protein-protein interaction databases

STRING522306.CAP2UW1_1173.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACV34502; ACV34502; CAP2UW1_1173.
GeneID8403309.
KEGGapp:CAP2UW1_1173.
PATRIC21258366. VBICanAcc132554_1445.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0036.
HOGENOMHOG000259347.
KOK01783.

Enzyme and pathway databases

BioCycAPHO522306:GHXL-1181-MONOMER.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
InterProIPR013785. Aldolase_TIM.
IPR026019. Ribul_P_3_epim.
IPR000056. Ribul_P_3_epim-like.
IPR011060. RibuloseP-bd_barrel.
[Graphical view]
PANTHERPTHR11749. PTHR11749. 1 hit.
PfamPF00834. Ribul_P_3_epim. 1 hit.
[Graphical view]
PIRSFPIRSF001461. RPE. 1 hit.
SUPFAMSSF51366. RibP_bind_barrel. 1 hit.
TIGRFAMsTIGR01163. rpe. 1 hit.
PROSITEPS01085. RIBUL_P_3_EPIMER_1. 1 hit.
PS01086. RIBUL_P_3_EPIMER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC7RRL3_ACCPU
AccessionPrimary (citable) accession number: C7RRL3
Entry history
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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