C7RJS1 (C7RJS1_ACCPU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L1 HAMAP-Rule MF_01318

Gene names

Name:	rplA HAMAP-Rule MF_01318
Ordered Locus Names:	CAP2UW1_3503 EMBL ACV36762.1

Organism

Accumulibacter phosphatis (strain UW-1) [Complete proteome] [HAMAP] EMBL ACV36762.1

Taxonomic identifier

522306 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › unclassified Betaproteobacteria › Candidatus Accumulibacter › Candidatus Accumulibacter phosphatis

Protein attributes

Sequence length	229 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318 Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318
Sequence similarities	Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Ontologies

Keywords
Biological process	Translation regulation HAMAP-Rule MF_01318
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01318 tRNA-binding HAMAP-Rule MF_01318
Molecular function	Repressor HAMAP-Rule MF_01318 Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01318 EMBL ACV36762.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	regulation of translation Inferred from electronic annotation. Source: UniProtKB-KW translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7RJS1 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: DB285AA5AF80EAF8	FASTA	229	24,004
	10 20 30 40 50 60 MATISKRQKA FKGKTDRNSS FALVDALKLA KELATAKFDE SIDVAVCLGV DPRKSDQIVR 70 80 90 100 110 120 GSVVLPAGTG KTVRVAVFAQ GEKAAAAREA GADIVGFEDL AAEIKSGVIN FDRVIATPDA 130 140 150 160 170 180 MRVVGQLGQI LGPRGLMPNP KVGTVTMDVA TAVKNAKAGQ VQYRTDKGGI IHSTVGRASF 190 200 210 220 EVDQLAINVK ALVDALIKAK PATSKGQYVR RIALSSTMGP GIRVDSTTL

References

[1]

"Complete sequence of chromosome of Candidatus Accumulibacter phosphatis clade IIA str. UW-1." US DOE Joint Genome Institute Martin H.G., Ivanova N., Kunin V., Warnecke F., Barry K., He S., Salamov A., Szeto E., Dalin E., Pangilinan J.L., Lapidus A., Lowry S., Kyrpides N.C., McMahon K.D., Hugenholtz P. Submitted (SEP-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: UW-1 EMBL ACV36762.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001715 Genomic DNA. Translation: ACV36762.1.
RefSeq	YP_003168691.1. NC_013194.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	522306.CAP2UW1_3503.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACV36762; ACV36762; CAP2UW1_3503.
GeneID	8405667.
KEGG	app:CAP2UW1_3503.
PATRIC	21263282. VBICanAcc132554_3874.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0081.
HOGENOM	HOG000207015.
KO	K02863.
Enzyme and pathway databases
BioCyc	APHO522306:GHXL-3533-MONOMER.
Family and domain databases
Gene3D	3.30.190.20. 2 hits. 3.40.50.790. 1 hit.
HAMAP	MF_01318_B. Ribosomal_L1_B.
InterPro	IPR005878. Ribosom_L1_bac-type. IPR002143. Ribosomal_L1. IPR016094. Ribosomal_L1_2-a/b-sand. IPR016095. Ribosomal_L1_3-a/b-sand. IPR023673. Ribosomal_L1_CS. IPR023674. Ribosomal_L1_SF. [Graphical view]
Pfam	PF00687. Ribosomal_L1. 1 hit. [Graphical view]
PIRSF	PIRSF002155. Ribosomal_L1. 1 hit.
SUPFAM	SSF56808. Ribosomal_L1. 1 hit.
TIGRFAMs	TIGR01169. rplA_bact. 1 hit.
PROSITE	PS01199. RIBOSOMAL_L1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C7RJS1_ACCPU

Accession

Primary (citable) accession number: C7RJS1

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)