C7RB76 (C7RB76_KANKD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003887
EC=5.4.99.- RuleBase RU003887

Gene names

Ordered Locus Names:

Kkor_1099

Organism

Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) [Complete proteome] [HAMAP]

Taxonomic identifier

523791 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Alcanivoracaceae › Kangiella › Kangiella koreensis

Protein attributes

Sequence length	203 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rsuA family. RuleBase RU003887

Ontologies

Keywords
Molecular function	Isomerase SAAS SAAS000748 RuleBase RU003887
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7RB76 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: 33C520A52484B242	FASTA	203	23,225
	10 20 30 40 50 60 MSKLVLFNKP FNTLCQFTGE NGDSTLADYI DIPEVYPAGR LDKDSEGLLL LTDDGQLQNQ 70 80 90 100 110 120 IASPKHKMEK TYWVQVEGVP EDNELEPLRL GVIIQNYKTK PAKVRLLETP EVWPRNPPIR 130 140 150 160 170 180 ERKNIPTSWL EITISEGKNR QVRRMTAAVG FPTLRLIRAQ IGQWQLDDLK VGEYKVIEVS 190 200 TPKAMAGPRN KSTQSKRFSQ RHK

References

[1]

"Complete genome sequence of Kangiella koreensis type strain (SW-125)." Han C., Sikorski J., Lapidus A., Nolan M., Glavina Del Rio T., Tice H., Cheng J.F., Lucas S., Chen F., Copeland A., Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Bruce D., Goodwin L., Pitluck S., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P., Saunders E., Brettin T., Goker M., Tindall B.J., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Detter J.C. Stand. Genomic Sci. 1:226-233(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 16069 / KCTC 12182 / SW-125.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001707 Genomic DNA. Translation: ACV26518.1.
RefSeq	YP_003146286.1. NC_013166.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	523791.Kkor_1099.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACV26518; ACV26518; Kkor_1099.
GeneID	8369893.
KEGG	kko:Kkor_1099.
PATRIC	22167638. VBIKanKor123990_1087.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1187.
HOGENOM	HOG000044955.
KO	K06181.
ProtClustDB	CLSK2533886.
Enzyme and pathway databases
BioCyc	KKOR523791:GHCO-1124-MONOMER.
Family and domain databases
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR000748. PsdUridine_synth_RsuA/RluB/E/F. IPR018496. PsdUridine_synth_RsuA/RluB_CS. IPR006145. PsdUridine_synth_RsuA/RluD. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00093. TIGR00093. 1 hit.
PROSITE	PS01149. PSI_RSU. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C7RB76_KANKD

Accession

Primary (citable) accession number: C7RB76

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)