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C7R071

- C7R071_JONDD

UniProt

C7R071 - C7R071_JONDD

Protein

Xylose isomerase

Gene

xylA

Organism
Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) (Listeria denitrificans)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (13 Oct 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei51 – 511UniRule annotation
    Active sitei54 – 541UniRule annotation
    Metal bindingi178 – 1781Magnesium 1UniRule annotation
    Metal bindingi214 – 2141Magnesium 1UniRule annotation
    Metal bindingi214 – 2141Magnesium 2UniRule annotation
    Metal bindingi217 – 2171Magnesium 2UniRule annotation
    Metal bindingi242 – 2421Magnesium 1UniRule annotation
    Metal bindingi252 – 2521Magnesium 2UniRule annotation
    Metal bindingi254 – 2541Magnesium 2UniRule annotation
    Metal bindingi292 – 2921Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciJDEN471856:GH77-479-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotation
    Ordered Locus Names:Jden_0466Imported
    OrganismiJonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) (Listeria denitrificans)Imported
    Taxonomic identifieri471856 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeJonesiaceaeJonesia
    ProteomesiUP000000628: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Protein-protein interaction databases

    STRINGi471856.Jden_0466.

    Structurei

    3D structure databases

    ProteinModelPortaliC7R071.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    HOGENOMiHOG000022596.
    KOiK01805.
    OMAiDLIPIDA.
    OrthoDBiEOG62NX4R.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013453. XylA_actinobac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02631. xylA_Arthro. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C7R071-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTQQDIKYSF GLWTTGWQGR DQFGDATRAF RSPADDVRKL AELGAWGFTF    50
    HDDDVVPFGS DDATRAKLLG EVKDAAQETG LTIEMVTTNL FSHPVFKDGG 100
    VTSNDRSVRR FALRKVLRNV DLTAELGAKT FVMWGGREGS EYDGAKDLHA 150
    ALERYKEGVD LIAGYIKEKG YDIKIALEPK PNEPRGDIFL PTVGHALGFI 200
    AELEHGDIVG LNPETGHEQM AGLNYTHGLA QALWADKLFH IDLNGQRSIK 250
    FDQDLVFGHG DLLSAFFTVD LVENGFPASP DAPRYTGPRH FDYKPSRTEA 300
    VEGVWDSAKA NMETYNLLAA KAKAYREDPE VKAAMEQAGL FELATPTLAA 350
    GESVADLLAD TSAFEDFDAD AAAERSFGFV RLNQLAIKHL IG 392
    Length:392
    Mass (Da):43,081
    Last modified:October 13, 2009 - v1
    Checksum:i04EE3A1706D36B36
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001706 Genomic DNA. Translation: ACV08130.1.
    RefSeqiYP_003160433.1. NC_013174.1.

    Genome annotation databases

    EnsemblBacteriaiACV08130; ACV08130; Jden_0466.
    GeneIDi8379651.
    KEGGijde:Jden_0466.
    PATRICi22160940. VBIJonDen9837_0483.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001706 Genomic DNA. Translation: ACV08130.1 .
    RefSeqi YP_003160433.1. NC_013174.1.

    3D structure databases

    ProteinModelPortali C7R071.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 471856.Jden_0466.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACV08130 ; ACV08130 ; Jden_0466 .
    GeneIDi 8379651.
    KEGGi jde:Jden_0466.
    PATRICi 22160940. VBIJonDen9837_0483.

    Phylogenomic databases

    eggNOGi COG2115.
    HOGENOMi HOG000022596.
    KOi K01805.
    OMAi DLIPIDA.
    OrthoDBi EOG62NX4R.

    Enzyme and pathway databases

    BioCyci JDEN471856:GH77-479-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013453. XylA_actinobac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02631. xylA_Arthro. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 14870 / DSM 20603 / CIP 55134Imported.

    Entry informationi

    Entry nameiC7R071_JONDD
    AccessioniPrimary (citable) accession number: C7R071
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 13, 2009
    Last sequence update: October 13, 2009
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3