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C7R071

- C7R071_JONDD

UniProt

C7R071 - C7R071_JONDD

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Protein

Xylose isomerase

Gene

xylA

Organism
Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) (Listeria denitrificans)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Note: Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei51 – 511UniRule annotation
Active sitei54 – 541UniRule annotation
Metal bindingi178 – 1781Magnesium 1UniRule annotation
Metal bindingi214 – 2141Magnesium 1UniRule annotation
Metal bindingi214 – 2141Magnesium 2UniRule annotation
Metal bindingi217 – 2171Magnesium 2UniRule annotation
Metal bindingi242 – 2421Magnesium 1UniRule annotation
Metal bindingi252 – 2521Magnesium 2UniRule annotation
Metal bindingi254 – 2541Magnesium 2UniRule annotation
Metal bindingi292 – 2921Magnesium 1UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciJDEN471856:GH77-479-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotation
Ordered Locus Names:Jden_0466Imported
OrganismiJonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) (Listeria denitrificans)Imported
Taxonomic identifieri471856 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeJonesiaceaeJonesia
ProteomesiUP000000628: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Protein-protein interaction databases

STRINGi471856.Jden_0466.

Structurei

3D structure databases

ProteinModelPortaliC7R071.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2115.
HOGENOMiHOG000022596.
KOiK01805.
OMAiDLIPIDA.
OrthoDBiEOG62NX4R.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013453. XylA_actinobac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02631. xylA_Arthro. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7R071-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTQQDIKYSF GLWTTGWQGR DQFGDATRAF RSPADDVRKL AELGAWGFTF
60 70 80 90 100
HDDDVVPFGS DDATRAKLLG EVKDAAQETG LTIEMVTTNL FSHPVFKDGG
110 120 130 140 150
VTSNDRSVRR FALRKVLRNV DLTAELGAKT FVMWGGREGS EYDGAKDLHA
160 170 180 190 200
ALERYKEGVD LIAGYIKEKG YDIKIALEPK PNEPRGDIFL PTVGHALGFI
210 220 230 240 250
AELEHGDIVG LNPETGHEQM AGLNYTHGLA QALWADKLFH IDLNGQRSIK
260 270 280 290 300
FDQDLVFGHG DLLSAFFTVD LVENGFPASP DAPRYTGPRH FDYKPSRTEA
310 320 330 340 350
VEGVWDSAKA NMETYNLLAA KAKAYREDPE VKAAMEQAGL FELATPTLAA
360 370 380 390
GESVADLLAD TSAFEDFDAD AAAERSFGFV RLNQLAIKHL IG
Length:392
Mass (Da):43,081
Last modified:October 13, 2009 - v1
Checksum:i04EE3A1706D36B36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001706 Genomic DNA. Translation: ACV08130.1.
RefSeqiYP_003160433.1. NC_013174.1.

Genome annotation databases

EnsemblBacteriaiACV08130; ACV08130; Jden_0466.
GeneIDi8379651.
KEGGijde:Jden_0466.
PATRICi22160940. VBIJonDen9837_0483.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001706 Genomic DNA. Translation: ACV08130.1 .
RefSeqi YP_003160433.1. NC_013174.1.

3D structure databases

ProteinModelPortali C7R071.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 471856.Jden_0466.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACV08130 ; ACV08130 ; Jden_0466 .
GeneIDi 8379651.
KEGGi jde:Jden_0466.
PATRICi 22160940. VBIJonDen9837_0483.

Phylogenomic databases

eggNOGi COG2115.
HOGENOMi HOG000022596.
KOi K01805.
OMAi DLIPIDA.
OrthoDBi EOG62NX4R.

Enzyme and pathway databases

BioCyci JDEN471856:GH77-479-MONOMER.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013453. XylA_actinobac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02631. xylA_Arthro. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14870 / DSM 20603 / CIP 55134Imported.

Entry informationi

Entry nameiC7R071_JONDD
AccessioniPrimary (citable) accession number: C7R071
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: November 26, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3