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C7PV91 (C7PV91_CHIPD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP MF_00114
Short name=DERA HAMAP MF_00114
EC=4.1.2.4 HAMAP MF_00114
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP MF_00114
Phosphodeoxyriboaldolase HAMAP MF_00114
Gene names
Name:deoC HAMAP MF_00114
Ordered Locus Names:Cpin_7285
OrganismChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) [Complete proteome] [HAMAP]
Taxonomic identifier485918 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Chitinophagaceae › Chitinophaga

Protein attributes

Sequence length215 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. HAMAP MF_00114 SAAS SAAS022979

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP MF_00114 SAAS SAAS022979

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP MF_00114 SAAS SAAS022979

Subcellular location

Cytoplasm By similarity HAMAP MF_00114 SAAS SAAS022979.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. HAMAP MF_00114

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1531Schiff-base intermediate with acetaldehyde By similarity HAMAP MF_00114
Active site1821 By similarity HAMAP MF_00114

Sequences

Sequence LengthMass (Da)Tools
C7PV91 [UniParc].

Last modified October 13, 2009. Version 1.
Checksum: 2A06C9D878A59133

FASTA21523,336
        10         20         30         40         50         60 
MKLNRYIDHT VLKPTTTLED IKTLCMEAVE YDFAAVCIPP PFVKMAKTFV GNTTTKVATV 

        70         80         90        100        110        120 
TGFPFGYSAI EAKVAETILA IVDGADEIDM VASILAIKNK DWAYLEKEIA TMMAVIRQHG 

       130        140        150        160        170        180 
KVIKVIIESG ILLEEEIVQC CELYARYQVD FVKTSTGYAE KGATVAAVSL MRANLPANIQ 

       190        200        210 
IKASGGIRTF DFAKELIDAG ATRIGTSNGV ALMKG

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References

[1]"The complete genome of Chitinophaga pinensis DSM 2588."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Sims D., Meinche L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Klenk H.-P., Eisen J.A.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001699 Genomic DNA. Translation: ACU64684.1.
RefSeqYP_003126885.1. NC_013132.1.

3D structure databases

ProteinModelPortalC7PV91.
ModBaseSearch...

Protein-protein interaction databases

STRINGC7PV91.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8363479.
GenomeReviewsGene locus Cpin_7285 in contig CP001699_GR.
KEGGcpi:Cpin_7285.
PATRIC21363170. VBIChiPin99107_7185.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAIDHTNLK.

Family and domain databases

HAMAPMF_00114. DeoC_type1.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
IPR022979. Deoxyribose_phosphate_aldo_1.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01619.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. DeoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC7PV91_CHIPD
AccessionPrimary (citable) accession number: C7PV91
Entry history
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info