C7PQ20 (C7PQ20_CHIPD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACU64258.1

Gene names

Ordered Locus Names:

Cpin_6857

Organism

Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) [Complete proteome] [HAMAP]

Taxonomic identifier

485918 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Chitinophagaceae › Chitinophaga › Chitinophaga pinensis

Protein attributes

Sequence length	530 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACU64258.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7PQ20 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: FF37D8FE554EA963	FASTA	530	60,764
	10 20 30 40 50 60 MKEFATLIRI LSNSTKTNEK LDALSKYMAT ADAADRLWVL ALFTGRRPKR TVNATQLSTW 70 80 90 100 110 120 CLQMTGLPAW LYEECYHTVG DLAETIALLL PPGKSISVHP LHYWIDQLIQ LEKADETTKQ 130 140 150 160 170 180 TFILKAWEEL DTSERFVFNK LITGGFRIGV SQKMMVNALA DTYDIPAATI SHMISGNWDP 190 200 210 220 230 240 QKTTIEALLS ENITEADASK PFPFYLAYAL ETGPAELGTP EQWQAEWKWD GIRGQIIKRN 250 260 270 280 290 300 GQLFVWSRGE ELITEKFPEY QPLLELLPEG TVLDGEILTF ADGFPLPFQT LQTRIGRKNV 310 320 330 340 350 360 TKKQLQEAPV AFLSYDLLEW EGQDIRTTAL QERRVLLEQL VEKINHPTLR LSPAITFHDW 370 380 390 400 410 420 EELAAFRLQA REKGSEGLML KKLDSAYQVG RKRGDWWKWK IDPLTIDAVM IYAQKGHGRR 430 440 450 460 470 480 SNLYTDYTFA VRDGEQLVSF TKAYSGLTDK EINEVDNWVK RNSIEKFGPV RTVKPELVFE 490 500 510 520 530 IGFEGIAASN RHKSGVALRF PRILRWRKDK PVTEINTLTD LQQLLQMHKQ

References

[1]

"The complete genome of Chitinophaga pinensis DSM 2588." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Sims D., Meinche L., Brettin T., Detter J.C., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Klenk H.-P., Eisen J.A. Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001699 Genomic DNA. Translation: ACU64258.1.
RefSeq	YP_003126459.1. NC_013132.1.
3D structure databases
ProteinModelPortal	C7PQ20.
ModBase	Search...
Protein-protein interaction databases
STRING	485918.Cpin_6857.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU64258; ACU64258; Cpin_6857.
GeneID	8363049.
KEGG	cpi:Cpin_6857.
PATRIC	21362318. VBIChiPin99107_6761.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	CLSK2553454.
Enzyme and pathway databases
BioCyc	CPIN485918:GHYR-6952-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C7PQ20_CHIPD

Accession

Primary (citable) accession number: C7PQ20

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)