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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Cpin_6857

Organism
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCPIN485918:GHYR-6953-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Cpin_6857Imported
OrganismiChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)Imported
Taxonomic identifieri485918 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesChitinophagaceaeChitinophaga
ProteomesiUP000002215 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi485918.Cpin_6857.

Structurei

3D structure databases

ProteinModelPortaliC7PQ20.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7PQ20-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEFATLIRI LSNSTKTNEK LDALSKYMAT ADAADRLWVL ALFTGRRPKR
60 70 80 90 100
TVNATQLSTW CLQMTGLPAW LYEECYHTVG DLAETIALLL PPGKSISVHP
110 120 130 140 150
LHYWIDQLIQ LEKADETTKQ TFILKAWEEL DTSERFVFNK LITGGFRIGV
160 170 180 190 200
SQKMMVNALA DTYDIPAATI SHMISGNWDP QKTTIEALLS ENITEADASK
210 220 230 240 250
PFPFYLAYAL ETGPAELGTP EQWQAEWKWD GIRGQIIKRN GQLFVWSRGE
260 270 280 290 300
ELITEKFPEY QPLLELLPEG TVLDGEILTF ADGFPLPFQT LQTRIGRKNV
310 320 330 340 350
TKKQLQEAPV AFLSYDLLEW EGQDIRTTAL QERRVLLEQL VEKINHPTLR
360 370 380 390 400
LSPAITFHDW EELAAFRLQA REKGSEGLML KKLDSAYQVG RKRGDWWKWK
410 420 430 440 450
IDPLTIDAVM IYAQKGHGRR SNLYTDYTFA VRDGEQLVSF TKAYSGLTDK
460 470 480 490 500
EINEVDNWVK RNSIEKFGPV RTVKPELVFE IGFEGIAASN RHKSGVALRF
510 520 530
PRILRWRKDK PVTEINTLTD LQQLLQMHKQ
Length:530
Mass (Da):60,764
Last modified:October 13, 2009 - v1
Checksum:iFF37D8FE554EA963
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001699 Genomic DNA. Translation: ACU64258.1.
RefSeqiWP_012794421.1. NC_013132.1.

Genome annotation databases

EnsemblBacteriaiACU64258; ACU64258; Cpin_6857.
KEGGicpi:Cpin_6857.
PATRICi21362318. VBIChiPin99107_6761.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001699 Genomic DNA. Translation: ACU64258.1.
RefSeqiWP_012794421.1. NC_013132.1.

3D structure databases

ProteinModelPortaliC7PQ20.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi485918.Cpin_6857.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU64258; ACU64258; Cpin_6857.
KEGGicpi:Cpin_6857.
PATRICi21362318. VBIChiPin99107_6761.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciCPIN485918:GHYR-6953-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034Imported.

Entry informationi

Entry nameiC7PQ20_CHIPD
AccessioniPrimary (citable) accession number: C7PQ20
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: July 22, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.