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Protein
Submitted name:

Alpha-L-rhamnosidase

Gene

Cpin_6026

Organism
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Protein family/group databases

CAZyiCBM67. Carbohydrate-Binding Module Family 67.
GH78. Glycoside Hydrolase Family 78.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-L-rhamnosidaseImported
Gene namesi
Ordered Locus Names:Cpin_6026Imported
OrganismiChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)Imported
Taxonomic identifieri485918 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesChitinophagiaChitinophagalesChitinophagaceaeChitinophaga
Proteomesi
  • UP000002215 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_500298191922 – 787Sequence analysisAdd BLAST766

Interactioni

Protein-protein interaction databases

STRINGi485918.Cpin_6026.

Structurei

3D structure databases

ProteinModelPortaliC7PFM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini66 – 202Bac_rhamnosid_NInterPro annotationAdd BLAST137
Domaini276 – 769Bac_rhamnosidInterPro annotationAdd BLAST494

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E48. Bacteria.
ENOG410XRPP. LUCA.
HOGENOMiHOG000252876.
OMAiIPTFSLW.
OrthoDBiPOG091H0531.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR008902. Bac_rhamnosid.
IPR013737. Bac_rhamnosid_N.
IPR008979. Galactose-bd-like.
[Graphical view]
PfamiPF05592. Bac_rhamnosid. 1 hit.
PF08531. Bac_rhamnosid_N. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
SSF49785. SSF49785. 1 hit.

Sequencei

Sequence statusi: Complete.

C7PFM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKLLSVVAL CLLLLPDFSY AQSAVYASQS RPWNANWIAP QNESGNNYGV
60 70 80 90 100
YYFRKKIDLP AKPSSFIIHV SADNRYKLYV NGILVSLGPA RGDTYYWNYE
110 120 130 140 150
TVDLAPYLTA GKNIVAALVF NEAENRPEAQ ISVRTAFILQ GKGPEEEILN
160 170 180 190 200
TNNSWKYTRD NGYQPITGFF AASTGEFVDM NQSVKDWTSL DFNDHNWPAA
210 220 230 240 250
AHLFQGHIKG DGDGLAWMLV PSSLPQMELT QQRLPLVRKT TGITLPETFP
260 270 280 290 300
ASKTAITIPA DTTVSFILDQ TFLTNAYINL HFSKGKNAGI SMRYAESLYD
310 320 330 340 350
DAAKYGDRKG NRNDVDGKDF KGRKDSLVSA GDMGQSYTTL YWRTFRYILV
360 370 380 390 400
TIHTQQEPLI IDDISGVFTG YPFTFNAAFN TQDNELKQIL DIGWRTARLC
410 420 430 440 450
AMETYFDCPY YEQLQYIGDT RIQALISYYN SGDDRLARNA IDLMDHSRIT
460 470 480 490 500
EGATQSRWPT RSTQIISTFS LWYIGMLHDF WMYRPDSSFI RSKLTGERAV
510 520 530 540 550
LDFFSRYQGQ DGSLRSTPYW NFIDWVGGKG WNFAMPPKGA DGASAILDLQ
560 570 580 590 600
LLMAYQWAAE LEASMGMPAY VALYKSKAAL LKTTIRNKYW NAGRKLFADT
610 620 630 640 650
DEKDVYSQHA NALAILAGVA NQQDLSDICQ QLLTDKSLTQ CTIYFKYYLH
660 670 680 690 700
LALAKGGLGN DYIKWLDVWR DNIKMGLTTW AEISDLPNSR SDCHAWGASP
710 720 730 740 750
NIEFFRMILG IDTDGPGFRK IKITPHLGDL KNISGEIPHP NGKVAATYTF
760 770 780
DRNKWKIKIH LPAKTTGTLL WKNKKYPLKT GENLLEI
Length:787
Mass (Da):89,042
Last modified:October 13, 2009 - v1
Checksum:iBCBF6DBB4B92660D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001699 Genomic DNA. Translation: ACU63440.1.
RefSeqiWP_012793605.1. NC_013132.1.

Genome annotation databases

EnsemblBacteriaiACU63440; ACU63440; Cpin_6026.
KEGGicpi:Cpin_6026.
PATRICi21360632. VBIChiPin99107_5928.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001699 Genomic DNA. Translation: ACU63440.1.
RefSeqiWP_012793605.1. NC_013132.1.

3D structure databases

ProteinModelPortaliC7PFM8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi485918.Cpin_6026.

Protein family/group databases

CAZyiCBM67. Carbohydrate-Binding Module Family 67.
GH78. Glycoside Hydrolase Family 78.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU63440; ACU63440; Cpin_6026.
KEGGicpi:Cpin_6026.
PATRICi21360632. VBIChiPin99107_5928.

Phylogenomic databases

eggNOGiENOG4105E48. Bacteria.
ENOG410XRPP. LUCA.
HOGENOMiHOG000252876.
OMAiIPTFSLW.
OrthoDBiPOG091H0531.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR008902. Bac_rhamnosid.
IPR013737. Bac_rhamnosid_N.
IPR008979. Galactose-bd-like.
[Graphical view]
PfamiPF05592. Bac_rhamnosid. 1 hit.
PF08531. Bac_rhamnosid_N. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
SSF49785. SSF49785. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC7PFM8_CHIPD
AccessioniPrimary (citable) accession number: C7PFM8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: November 2, 2016
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.