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C7PDV8 (C7PDV8_CHIPD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase HAMAP MF_00519
EC=5.3.1.4 HAMAP MF_00519
Gene names
Name:araA HAMAP MF_00519
Ordered Locus Names:Cpin_3996
OrganismChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) [Complete proteome] [HAMAP]
Taxonomic identifier485918 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Chitinophagaceae › Chitinophaga

Protein attributes

Sequence length501 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519 SAAS SAAS003762

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519 SAAS SAAS003762

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519 SAAS SAAS003762

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 SAAS SAAS003762

Sequence similarities

Belongs to the arabinose isomerase family. HAMAP MF_00519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3061Manganese By similarity HAMAP MF_00519
Metal binding3331Manganese By similarity HAMAP MF_00519
Metal binding3501Manganese By similarity HAMAP MF_00519
Metal binding4491Manganese By similarity HAMAP MF_00519

Sequences

Sequence LengthMass (Da)Tools
C7PDV8 [UniParc].

Last modified October 13, 2009. Version 1.
Checksum: C5C907E20E21D3AE

FASTA50155,724
        10         20         30         40         50         60 
MIQLKQFEAW FITGSQHLYG EETLKQVAAH AEKIAQSLSN EANIPVRIVF KPVVKTPDEI 

        70         80         90        100        110        120 
YRICQEANTA PDCIGVIAWM HTFSPAKMWI GGLKVLQRPL LHLHTQFNRD IPWGDIDMDF 

       130        140        150        160        170        180 
MNLNQSAHGD REFGFMMSRM RMDRKVVAGH WQDPDVVAEI GVWLRAAAGW FDWQGARFAR 

       190        200        210        220        230        240 
IGDNMRQVAV TEGDKVEAEL QFGYSVNGYG IGDVVKYING ISDAAIGKLV QEYQDTYTLS 

       250        260        270        280        290        300 
AALQKNGAQH ASLLEAARIE LGLRAFLEEG RFKGFTDTFE DLHGMEQLPG IAVQRLMADG 

       310        320        330        340        350        360 
YGFGGEGDWK TAALVRAMKV MGSGLPGGNS FMEDYTYHFD PDNRLVLGAH MLEICSSIAS 

       370        380        390        400        410        420 
GKASCEIHPL GIGGKADPVR LVFNVASGPA INASVIDMGN RFRLLVNEVE AVAPLHELPK 

       430        440        450        460        470        480 
LPVARVLWKP YPDMRTGCAA WIQAGGAHHT CYSQNLGAAH MQDFADMAGI EYVKIGQQTD 

       490        500 
LYQFRNELRW NDAFYLMKGF K

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References

[1]"The complete genome of Chitinophaga pinensis DSM 2588."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Sims D., Meinche L., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Klenk H.-P., Eisen J.A.
Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001699 Genomic DNA. Translation: ACU61458.1.
RefSeqYP_003123659.1. NC_013132.1.

3D structure databases

ProteinModelPortalC7PDV8.
ModBaseSearch...

Protein-protein interaction databases

STRINGC7PDV8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8360169.
GenomeReviewsGene locus Cpin_3996 in contig CP001699_GR.
KEGGcpi:Cpin_3996.
PATRIC21356575. VBIChiPin99107_3910.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAEVCPTIA.
ProtClustDBPRK02929.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC7PDV8_CHIPD
AccessionPrimary (citable) accession number: C7PDV8
Entry history
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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