C7PDV6 (C7PDV6_CHIPD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase RuleBase RU003455
EC=2.7.1.16 RuleBase RU003455

Gene names

Ordered Locus Names:

Cpin_3994

Organism

Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) [Complete proteome] [HAMAP]

Taxonomic identifier

485918 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Chitinophagaceae › Chitinophaga

Protein attributes

Sequence length	547 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase RuleBase RU003455 SAAS SAAS005929 EMBL ACU61456.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7PDV6 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: CA99A9A841E989AB	FASTA	547	59,038
	10 20 30 40 50 60 MENSFVIGVD FGTDSVRSLV VNTQTGQEAG SAVHYYPRWQ KGLYCDPATQ QYRQHPLDYL 70 80 90 100 110 120 EGLEHSIREA LQQCPPGTAA LVKGIAVDTT GSTPGPVDET GTPLALVPGF EENPNAMFVL 130 140 150 160 170 180 WKDHTANKEA ALINDIAHSN GMDYTQYSGG IYSSEWYWAK ILHVITTDDA VREKAASWVE 190 200 210 220 230 240 HCDWIPAVLT GNKSLSTLLR SRCAAGHKAM WHASWGGLPP RTFLEKLNPA LTKYDQTYTD 250 260 270 280 290 300 TVEATVPAGT ISAAWAEKLG LPTDVIIGTG AFDAHMGAVG GGIQSYSLCK VIGTSTCDIL 310 320 330 340 350 360 VAPMEEAGHL FVKGICGQVD GSVIPGMLGL EAGQSAYGDV FAWLRKLIMG PMYALLPDEQ 370 380 390 400 410 420 DKLAAVEGRL LGYLSAQAQQ LPLKENDPLA LDWFNGRRTP DANHTLKSTI TGLHLGIDAV 430 440 450 460 470 480 QVFKALVEAT AFGAQSIAAR FEKEGIAIKE VIALGGVAKK SGYAMQVLAD VMNRPIRIVN 490 500 510 520 530 540 SENACALGAA MFAAVAAGVY PDIDQAQQAM TSGFETTWQP RQENVAYYAA RYRKFQELGA ITEKLYV

References

[1]

"The complete genome of Chitinophaga pinensis DSM 2588." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Sims D., Meinche L., Brettin T., Detter J.C., Han C. , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Klenk H.-P., Eisen J.A. Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001699 Genomic DNA. Translation: ACU61456.1.
RefSeq	YP_003123657.1. NC_013132.1.
3D structure databases
ProteinModelPortal	C7PDV6.
ModBase	Search...
Protein-protein interaction databases
STRING	C7PDV6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8360167.
GenomeReviews	Gene locus Cpin_3994 in contig CP001699_GR.
KEGG	cpi:Cpin_3994.
PATRIC	21356571. VBIChiPin99107_3908.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	NGRRTPD.
ProtClustDB	PRK04123.
Family and domain databases
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C7PDV6_CHIPD

Accession

Primary (citable) accession number: C7PDV6

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)