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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Mefer_1305

Organism
Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) (Methanococcus fervens)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMFER573064:GHUI-1347-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mefer_1305Imported
OrganismiMethanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) (Methanococcus fervens)Imported
Taxonomic identifieri573064 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000001495: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi573064.Mefer_1305.

Structurei

3D structure databases

ProteinModelPortaliC7P982.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiEEKMNGY.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

C7P982-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MQVSAYALDK IAEKLNLSIK DLNKAFKKKI LREDEYKEQK YLLFKKGFRG
60 70 80 90 100
IEKGTVIFLN ENLDVVRGYP KTYRAITLYP TIKNHFIDKV VVEEKLNGYN
110 120 130 140 150
IRIVKVDDEI YALTRSGYIC PFTTKKVKKF LNLEILDDYN EYMLCGEMIG
160 170 180 190 200
LNNPYTPYYY KEADKGYENL GFYIFDIKER ETNKSLPVKE RMKLCEKYNL
210 220 230 240 250
PYVKPLAIVD KETAHIQVRK IIEKLNKEGR EGVVLKDPDM AVSPIKYTTH
260 270 280 290 300
YTQCEDLKSA FTFFFDLGID FIFSRVVREG FMSYEFKESL EERKIRAKDL
310 320 330 340 350
GEAILLPMVE TINKVANGER VSEDFELIFD SEEDFEEFLY FMRKMKMIIN
360 370 380 390
IKNVEEINTN EGVKIKALIG KIYNRTNDKI ISYLNGTLWE
Length:390
Mass (Da):45,910
Last modified:October 13, 2009 - v1
Checksum:i0BE3D03979C93838
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001696 Genomic DNA. Translation: ACV25114.1.
RefSeqiWP_015791848.1. NC_013156.1.
YP_003128614.1. NC_013156.1.

Genome annotation databases

EnsemblBacteriaiACV25114; ACV25114; Mefer_1305.
GeneIDi8366008.
KEGGimfe:Mefer_1305.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001696 Genomic DNA. Translation: ACV25114.1.
RefSeqiWP_015791848.1. NC_013156.1.
YP_003128614.1. NC_013156.1.

3D structure databases

ProteinModelPortaliC7P982.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi573064.Mefer_1305.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACV25114; ACV25114; Mefer_1305.
GeneIDi8366008.
KEGGimfe:Mefer_1305.

Phylogenomic databases

eggNOGiCOG1423.
HOGENOMiHOG000224394.
KOiK07468.
OMAiEEKMNGY.

Enzyme and pathway databases

BioCyciMFER573064:GHUI-1347-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Methanocaldococcus fervens AG86."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Detter J.C., Han C., Tapia R., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Lupa-Sieprawska M., Whitman W.B.
    Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 4213 / JCM 157852 / AG86Imported.

Entry informationi

Entry nameiC7P982_METFA
AccessioniPrimary (citable) accession number: C7P982
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: February 4, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.