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Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Ksed_19790

Organism
Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) (Micrococcus sedentarius)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciKSED478801:GI4L-1970-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D/DNA polymerase LigDImported
Gene namesi
Ordered Locus Names:Ksed_19790Imported
OrganismiKytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) (Micrococcus sedentarius)Imported
Taxonomic identifieri478801 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeDermacoccaceaeKytococcus
ProteomesiUP000006666: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi478801.Ksed_19790.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7NKD9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARSERRTVR VGERTLSVSS LDKVLYPEAG TTKADVVHYY LSVAEVLLPQ
60 70 80 90 100
LAGRPVTRKR WVDGVGTEGD PGEVFFRKDL EDSAPDWIPT GRIVHANRAN
110 120 130 140 150
SYPLATEAAV LAWFAQVAAL ELHTPQWRFG PDGQPRRPDR LVLDLDPGEG
160 170 180 190 200
VGLTECAQVA RWCREVLDGM ALEAFPVTSG SKGIHLYAAL DGTHDAEAVS
210 220 230 240 250
AVAHELARAL EADHPDLVVS TMKRARRAGK VFLDWSQNNA SKTTVAPYSL
260 270 280 290 300
RGRARPTVAA PRTWEELDDP GLAQLELDEV LDRVADGIDP VASLGAGTGP
310 320 330 340 350
GGAGEVSSPA PDRLRTYRSM RDPDRTAEPV PADPPREREA PDGELPSFVI
360 370 380 390 400
QEHHASSLHW DFRLEHSGVL VSWAVPKGPP LEHDTNRLAV MTEDHPLEYG
410 420 430 440 450
TFEGTIAAGE YGAGEVTIWD AGTYERKKWR EGKEVIAVLH GRPDGGLGGV
460 470 480 490 500
PRRFALIQAT GMGSERNWLL RLTDEQPGAG HPQDGSPEEV TAAPSPSRSR
510 520 530 540 550
ADRSDSRTAR RALRRRPAPG FTVADLPAAM AATAGTPEQV ERAVAGGQEW
560 570 580 590 600
AFEMKWDGYR VVAGVRTAGQ GPADADADAD AGAEREGAVV LASRNGKDLT
610 620 630 640 650
DTFPAAVELT RLLRGEAAER GGAVLDGELV ALDDRGRPDF GLLQAALGDG
660 670 680 690 700
PGVNAAGDPI ELRYLVFDLL QLGAPGDPED RQRSLLRIPW GERRELLREV
710 720 730 740 750
LGTGGDAVSV PPAHTGTLAQ AQRASRGLGL EGVVAKRVDA VYLPGQRGSA
760 770 780 790 800
WVKLKTQRHQ EVVVIGVRQG RGGRSGGIGS LLVAVGDDEG ELRYAGRVGT
810 820 830 840 850
GFSAAQLADI EKTLRRIERK TPPVDDVPAA DRTDAWWVTP RLVGEVSLAG
860 870
RTRDQRVRQA VWRGWRPDKE AGEVRWEV
Length:878
Mass (Da):94,745
Last modified:October 13, 2009 - v1
Checksum:i1598F2222185E9DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001686 Genomic DNA. Translation: ACV06977.1.
RefSeqiYP_003149742.1. NC_013169.1.

Genome annotation databases

EnsemblBacteriaiACV06977; ACV06977; Ksed_19790.
GeneIDi8373483.
KEGGikse:Ksed_19790.
PATRICi22193619. VBIKytSed14067_1909.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001686 Genomic DNA. Translation: ACV06977.1.
RefSeqiYP_003149742.1. NC_013169.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi478801.Ksed_19790.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACV06977; ACV06977; Ksed_19790.
GeneIDi8373483.
KEGGikse:Ksed_19790.
PATRICi22193619. VBIKytSed14067_1909.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciKSED478801:GI4L-1970-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14392 / DSM 20547 / CCM 314 / 541Imported.

Entry informationi

Entry nameiC7NKD9_KYTSD
AccessioniPrimary (citable) accession number: C7NKD9
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: January 7, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.