C7NKD9 (C7NKD9_KYTSD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D/DNA polymerase LigD EMBL ACV06977.1

Gene names

Ordered Locus Names:

Ksed_19790

Organism

Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) (Micrococcus sedentarius) [Complete proteome] [HAMAP]

Taxonomic identifier

478801 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Dermacoccaceae › Kytococcus › Kytococcus sedentarius

Protein attributes

Sequence length	878 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACV06977.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7NKD9 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: 1598F2222185E9DE	FASTA	878	94,745
	10 20 30 40 50 60 MARSERRTVR VGERTLSVSS LDKVLYPEAG TTKADVVHYY LSVAEVLLPQ LAGRPVTRKR 70 80 90 100 110 120 WVDGVGTEGD PGEVFFRKDL EDSAPDWIPT GRIVHANRAN SYPLATEAAV LAWFAQVAAL 130 140 150 160 170 180 ELHTPQWRFG PDGQPRRPDR LVLDLDPGEG VGLTECAQVA RWCREVLDGM ALEAFPVTSG 190 200 210 220 230 240 SKGIHLYAAL DGTHDAEAVS AVAHELARAL EADHPDLVVS TMKRARRAGK VFLDWSQNNA 250 260 270 280 290 300 SKTTVAPYSL RGRARPTVAA PRTWEELDDP GLAQLELDEV LDRVADGIDP VASLGAGTGP 310 320 330 340 350 360 GGAGEVSSPA PDRLRTYRSM RDPDRTAEPV PADPPREREA PDGELPSFVI QEHHASSLHW 370 380 390 400 410 420 DFRLEHSGVL VSWAVPKGPP LEHDTNRLAV MTEDHPLEYG TFEGTIAAGE YGAGEVTIWD 430 440 450 460 470 480 AGTYERKKWR EGKEVIAVLH GRPDGGLGGV PRRFALIQAT GMGSERNWLL RLTDEQPGAG 490 500 510 520 530 540 HPQDGSPEEV TAAPSPSRSR ADRSDSRTAR RALRRRPAPG FTVADLPAAM AATAGTPEQV 550 560 570 580 590 600 ERAVAGGQEW AFEMKWDGYR VVAGVRTAGQ GPADADADAD AGAEREGAVV LASRNGKDLT 610 620 630 640 650 660 DTFPAAVELT RLLRGEAAER GGAVLDGELV ALDDRGRPDF GLLQAALGDG PGVNAAGDPI 670 680 690 700 710 720 ELRYLVFDLL QLGAPGDPED RQRSLLRIPW GERRELLREV LGTGGDAVSV PPAHTGTLAQ 730 740 750 760 770 780 AQRASRGLGL EGVVAKRVDA VYLPGQRGSA WVKLKTQRHQ EVVVIGVRQG RGGRSGGIGS 790 800 810 820 830 840 LLVAVGDDEG ELRYAGRVGT GFSAAQLADI EKTLRRIERK TPPVDDVPAA DRTDAWWVTP 850 860 870 RLVGEVSLAG RTRDQRVRQA VWRGWRPDKE AGEVRWEV

References

[1]

"Complete genome sequence of Kytococcus sedentarius type strain (541)." Sims D., Brettin T., Detter J.C., Han C., Lapidus A., Copeland A., Glavina Del Rio T., Nolan M., Chen F., Lucas S., Tice H., Cheng J.F., Bruce D., Goodwin L., Pitluck S., Ovchinnikova G., Pati A., Ivanova N. , Mavrommatis K., Chen A., Palaniappan K., D'haeseleer P., Chain P., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Schneider S., Goker M., Pukall R., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 1:12-20(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 14392 / DSM 20547 / CCM 314 / 541.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001686 Genomic DNA. Translation: ACV06977.1.
RefSeq	YP_003149742.1. NC_013169.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	478801.Ksed_19790.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACV06977; ACV06977; Ksed_19790.
GeneID	8373483.
KEGG	kse:Ksed_19790.
PATRIC	22193619. VBIKytSed14067_1909.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	SGSKGIH.
ProtClustDB	PRK09632.
Enzyme and pathway databases
BioCyc	KSED478801:GI4L-1970-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C7NKD9_KYTSD

Accession

Primary (citable) accession number: C7NKD9

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)