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C7NKD9

- C7NKD9_KYTSD

UniProt

C7NKD9 - C7NKD9_KYTSD

Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Ksed_19790

Organism
Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) (Micrococcus sedentarius)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 1 (13 Oct 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciKSED478801:GI4L-1970-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase D/DNA polymerase LigDImported
    Gene namesi
    Ordered Locus Names:Ksed_19790Imported
    OrganismiKytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) (Micrococcus sedentarius)Imported
    Taxonomic identifieri478801 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeDermacoccaceaeKytococcus
    ProteomesiUP000006666: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi478801.Ksed_19790.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C7NKD9-1 [UniParc]FASTAAdd to Basket

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    MARSERRTVR VGERTLSVSS LDKVLYPEAG TTKADVVHYY LSVAEVLLPQ    50
    LAGRPVTRKR WVDGVGTEGD PGEVFFRKDL EDSAPDWIPT GRIVHANRAN 100
    SYPLATEAAV LAWFAQVAAL ELHTPQWRFG PDGQPRRPDR LVLDLDPGEG 150
    VGLTECAQVA RWCREVLDGM ALEAFPVTSG SKGIHLYAAL DGTHDAEAVS 200
    AVAHELARAL EADHPDLVVS TMKRARRAGK VFLDWSQNNA SKTTVAPYSL 250
    RGRARPTVAA PRTWEELDDP GLAQLELDEV LDRVADGIDP VASLGAGTGP 300
    GGAGEVSSPA PDRLRTYRSM RDPDRTAEPV PADPPREREA PDGELPSFVI 350
    QEHHASSLHW DFRLEHSGVL VSWAVPKGPP LEHDTNRLAV MTEDHPLEYG 400
    TFEGTIAAGE YGAGEVTIWD AGTYERKKWR EGKEVIAVLH GRPDGGLGGV 450
    PRRFALIQAT GMGSERNWLL RLTDEQPGAG HPQDGSPEEV TAAPSPSRSR 500
    ADRSDSRTAR RALRRRPAPG FTVADLPAAM AATAGTPEQV ERAVAGGQEW 550
    AFEMKWDGYR VVAGVRTAGQ GPADADADAD AGAEREGAVV LASRNGKDLT 600
    DTFPAAVELT RLLRGEAAER GGAVLDGELV ALDDRGRPDF GLLQAALGDG 650
    PGVNAAGDPI ELRYLVFDLL QLGAPGDPED RQRSLLRIPW GERRELLREV 700
    LGTGGDAVSV PPAHTGTLAQ AQRASRGLGL EGVVAKRVDA VYLPGQRGSA 750
    WVKLKTQRHQ EVVVIGVRQG RGGRSGGIGS LLVAVGDDEG ELRYAGRVGT 800
    GFSAAQLADI EKTLRRIERK TPPVDDVPAA DRTDAWWVTP RLVGEVSLAG 850
    RTRDQRVRQA VWRGWRPDKE AGEVRWEV 878
    Length:878
    Mass (Da):94,745
    Last modified:October 13, 2009 - v1
    Checksum:i1598F2222185E9DE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001686 Genomic DNA. Translation: ACV06977.1.
    RefSeqiYP_003149742.1. NC_013169.1.

    Genome annotation databases

    EnsemblBacteriaiACV06977; ACV06977; Ksed_19790.
    GeneIDi8373483.
    KEGGikse:Ksed_19790.
    PATRICi22193619. VBIKytSed14067_1909.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001686 Genomic DNA. Translation: ACV06977.1 .
    RefSeqi YP_003149742.1. NC_013169.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 478801.Ksed_19790.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACV06977 ; ACV06977 ; Ksed_19790 .
    GeneIDi 8373483.
    KEGGi kse:Ksed_19790.
    PATRICi 22193619. VBIKytSed14067_1909.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci KSED478801:GI4L-1970-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 14392 / DSM 20547 / CCM 314 / 541Imported.

    Entry informationi

    Entry nameiC7NKD9_KYTSD
    AccessioniPrimary (citable) accession number: C7NKD9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 13, 2009
    Last sequence update: October 13, 2009
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3