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Protein
Submitted name:

DNA polymerase LigD-like ligase domain-containing protein

Gene

Svir_20210

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-2011-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD-like ligase domain-containing proteinImported
Gene namesi
Ordered Locus Names:Svir_20210Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaeSaccharomonospora
ProteomesiUP000000841 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_20210.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiQDNAAVF.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7MVT9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISRGLFRGI LCRRLGIGTV VAVGTVALES PAVVLEGLLY LGDSAALETI
60 70 80 90 100
HAEYENMAPP TPLPPMLAVS GDVPEGDQWV YDWKWDGVRA IVGIEGGEVR
110 120 130 140 150
VHSRALRDIT SRYPELQELA AATRARLLLD GEIVALDEQG RPDFDRLQSR
160 170 180 190 200
MQVGLPTPRM LRESPLYYYV LDLLVADGEN LCGSSYRHRR DRLAELGLPA
210 220 230 240 250
PPTIRPPDPH ARISGSGLLD IAAEHGFEGI MAKRLDSPYR PGVRSTDWIN
260 270 280 290 300
TPLRIRQEVV IGGWVPGRSR HAGTLGTLLL GAYDPSGALS YIGHVETGRP
310 320 330 340 350
DPSSEALLGK LEALTRPSSP FATPVPRRRA RHARWVEPEL VGEVEHRRWT
360 370
NDRTLWRPSW QGLRTDREPA EVTLPV
Length:376
Mass (Da):41,596
Last modified:October 13, 2009 - v1
Checksum:iE2631BC967AD98D9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU97039.1.
RefSeqiWP_015786352.1. NC_013159.1.
YP_003133866.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU97039; ACU97039; Svir_20210.
KEGGisvi:Svir_20210.
PATRICi23394468. VBISacVir111818_2019.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU97039.1.
RefSeqiWP_015786352.1. NC_013159.1.
YP_003133866.1. NC_013159.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471857.Svir_20210.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU97039; ACU97039; Svir_20210.
KEGGisvi:Svir_20210.
PATRICi23394468. VBISacVir111818_2019.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiQDNAAVF.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-2011-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101Imported.

Entry informationi

Entry nameiC7MVT9_SACVD
AccessioniPrimary (citable) accession number: C7MVT9
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: June 24, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.