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C7MT25 (C7MT25_SACVD) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length287 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 HTH tetR-type DNA-binding domain. RuleBase RU000710

Contains HTH tetR-type DNA-binding domain. SAAS SAAS001647

Sequences

Sequence LengthMass (Da)Tools
C7MT25 [UniParc].

Last modified October 13, 2009. Version 1.
Checksum: B45814F5B8E3E3E2

FASTA28732,765
        10         20         30         40         50         60 
MSESDELRRR VRGLIHSRPG AQREFAAAIG LDESKLSKSL NGTRRFSPHE LVRIAEHSGV 

        70         80         90        100        110        120 
TVNWLINGRD DARTVAAVPA PTARSRSAPA GEPQSEARRR ILETAWRLIA RRGYHNVRIH 

       130        140        150        160        170        180 
DIASELGTSN ATIHYHFPSK KDILLEALRR NVKLAFDRQV AELHTIADAR ERLVRLVELQ 

       190        200        210        220        230        240 
LPTPGLLRDE WSVWLQVWTE STLNPKIRDL YNDAYDRWYQ TIAMTIRTGQ KQGVFRDQDA 

       250        260        270        280 
DELATRLSAL IDGLGIQVLT GKRGCSVDHM RQHLNDFIEH NIVERRP 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Saccharomonospora viridis type strain (P101)."
Pati A., Sikorski J., Nolan M., Lapidus A., Copeland A., Glavina del Rio T., Lucas S., Chen F., Tice H., Pitluck S., Cheng J.-F., Chertkov O., Brettin T., Han C., Detter J.C., Kuske C., Bruce D., Goodwin L. expand/collapse author list , Chain P., D'haeseleer P., Chen A., Palaniappan K., Ivanova N., Mavromatis K., Mikhailova N., Rohde M., Tindall B.J., Goeker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P.
Stand. Genomic Sci. 1:141-149(2009)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101.
[2]"Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017."
Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Jedrzejczak R., Joachimiak A., Anderson W.F.
Submitted (DEC-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).
[3]"Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine."
Midwest Center for Structural Genomics (MCSG)
Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
Submitted (MAR-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS) OF 94-287.
[4]"Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with choline."
Midwest Center for Structural Genomics (MCSG)
Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
Submitted (MAY-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 93-287.
[5]"Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with N,N-dimethylmethanamine."
Midwest Center for Structural Genomics (MCSG)
Halavaty A.S., Filippova E.V., Minasov G., Kiryukhina O., Shuvalova L., Endres M., Joachimiak A., Anderson W.F.
Submitted (OCT-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 95-284.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001683 Genomic DNA. Translation: ACU96662.1.
RefSeqYP_003133489.1. NC_013159.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4ICHX-ray1.95A/B1-287[»]
4JNNX-ray2.35A94-287[»]
4KWAX-ray1.80A/B93-287[»]
4NELX-ray2.05A95-284[»]
ProteinModelPortalC7MT25.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING471857.Svir_16270.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACU96662; ACU96662; Svir_16270.
GeneID8386960.
KEGGsvi:Svir_16270.
PATRIC23393676. VBISacVir111818_1624.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG73485.
HOGENOMHOG000253552.
OMARGYHSVR.
OrthoDBEOG6ND0H6.
ProtClustDBCLSK644372.

Enzyme and pathway databases

BioCycSVIR471857:GHAV-1622-MONOMER.

Family and domain databases

Gene3D1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSPR00455. HTHTETR.
SUPFAMSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC7MT25_SACVD
AccessionPrimary (citable) accession number: C7MT25
Entry history
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: March 19, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)