C7MT25 (C7MT25_SACVD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator EMBL ACU96662.1

Gene names

Ordered Locus Names:

Svir_16270

Organism

Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) [Complete proteome] [HAMAP] EMBL ACU96662.1

Taxonomic identifier

471857 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Pseudonocardineae › Pseudonocardiaceae › Saccharomonospora › Saccharomonospora viridis

Protein attributes

Sequence length	287 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 HTH tetR-type DNA-binding domain. RuleBase RU000710 SAAS SAAS001647

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000710 SAAS SAAS001647
Ligand	DNA-binding RuleBase RU000710 SAAS SAAS001647
Technical term	3D-structure PDB 4ICH Complete proteome
Gene Ontology (GO)
Biological_process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7MT25 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: B45814F5B8E3E3E2	FASTA	287	32,765
	10 20 30 40 50 60 MSESDELRRR VRGLIHSRPG AQREFAAAIG LDESKLSKSL NGTRRFSPHE LVRIAEHSGV 70 80 90 100 110 120 TVNWLINGRD DARTVAAVPA PTARSRSAPA GEPQSEARRR ILETAWRLIA RRGYHNVRIH 130 140 150 160 170 180 DIASELGTSN ATIHYHFPSK KDILLEALRR NVKLAFDRQV AELHTIADAR ERLVRLVELQ 190 200 210 220 230 240 LPTPGLLRDE WSVWLQVWTE STLNPKIRDL YNDAYDRWYQ TIAMTIRTGQ KQGVFRDQDA 250 260 270 280 DELATRLSAL IDGLGIQVLT GKRGCSVDHM RQHLNDFIEH NIVERRP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Saccharomonospora viridis type strain (P101)." Pati A., Sikorski J., Nolan M., Lapidus A., Copeland A., Glavina del Rio T., Lucas S., Chen F., Tice H., Pitluck S., Cheng J.-F., Chertkov O., Brettin T., Han C., Detter J.C., Kuske C., Bruce D., Goodwin L. , Chain P., D'haeseleer P., Chen A., Palaniappan K., Ivanova N., Mavromatis K., Mikhailova N., Rohde M., Tindall B.J., Goeker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P. Stand. Genomic Sci. 1:141-149(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101.
[2]	"Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017." Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Jedrzejczak R., Joachimiak A., Anderson W.F. Submitted (DEC-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP001683 Genomic DNA. Translation: ACU96662.1.

RefSeq

YP_003133489.1. NC_013159.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4ICH	X-ray	1.95	A/B	1-287	[»]

ProteinModelPortal

C7MT25.

ModBase

Search...

Protein-protein interaction databases

STRING

471857.Svir_16270.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

ACU96662; ACU96662; Svir_16270.

GeneID

8386960.

KEGG

svi:Svir_16270.

PATRIC

23393676. VBISacVir111818_1624.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

NOG73485.

HOGENOM

HOG000253552.

OMA

RWCMDED.

ProtClustDB

CLSK644372.

Family and domain databases

Gene3D

1.10.260.40. 1 hit.
1.10.357.10. 1 hit.

InterPro

IPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]

Pfam

PF00440. TetR_N. 1 hit.
[Graphical view]

PRINTS

PR00455. HTHTETR.

SUPFAM

SSF46689. Homeodomain_like. 1 hit.
SSF47413. Lambda_like_DNA. 1 hit.
SSF48498. TetR_like_C. 1 hit.

PROSITE

PS50977. HTH_TETR_2. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

C7MT25_SACVD

Accession

Primary (citable) accession number: C7MT25

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)