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Protein
Submitted name:

Transcriptional regulator

Gene

Svir_16270

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1622-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulatorImported
Gene namesi
Ordered Locus Names:Svir_16270Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharomonospora
ProteomesiUP000000841 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_16270.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4ICHX-ray1.95A/B1-287[»]
4JNNX-ray2.35A94-287[»]
4KWAX-ray1.80A/B93-287[»]
4NELX-ray2.05A95-284[»]
ProteinModelPortaliC7MT25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation
Contains HTH tetR-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiNOG73485.
HOGENOMiHOG000253552.
OMAiVNWLLNG.
OrthoDBiEOG6ND0H6.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7MT25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSESDELRRR VRGLIHSRPG AQREFAAAIG LDESKLSKSL NGTRRFSPHE
60 70 80 90 100
LVRIAEHSGV TVNWLINGRD DARTVAAVPA PTARSRSAPA GEPQSEARRR
110 120 130 140 150
ILETAWRLIA RRGYHNVRIH DIASELGTSN ATIHYHFPSK KDILLEALRR
160 170 180 190 200
NVKLAFDRQV AELHTIADAR ERLVRLVELQ LPTPGLLRDE WSVWLQVWTE
210 220 230 240 250
STLNPKIRDL YNDAYDRWYQ TIAMTIRTGQ KQGVFRDQDA DELATRLSAL
260 270 280
IDGLGIQVLT GKRGCSVDHM RQHLNDFIEH NIVERRP
Length:287
Mass (Da):32,765
Last modified:October 13, 2009 - v1
Checksum:iB45814F5B8E3E3E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96662.1.
RefSeqiWP_015785975.1. NC_013159.1.
YP_003133489.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU96662; ACU96662; Svir_16270.
KEGGisvi:Svir_16270.
PATRICi23393676. VBISacVir111818_1624.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96662.1.
RefSeqiWP_015785975.1. NC_013159.1.
YP_003133489.1. NC_013159.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4ICHX-ray1.95A/B1-287[»]
4JNNX-ray2.35A94-287[»]
4KWAX-ray1.80A/B93-287[»]
4NELX-ray2.05A95-284[»]
ProteinModelPortaliC7MT25.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471857.Svir_16270.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU96662; ACU96662; Svir_16270.
KEGGisvi:Svir_16270.
PATRICi23393676. VBISacVir111818_1624.

Phylogenomic databases

eggNOGiNOG73485.
HOGENOMiHOG000253552.
OMAiVNWLLNG.
OrthoDBiEOG6ND0H6.

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1622-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101Imported.
  2. "Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017."
    Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Jedrzejczak R., Joachimiak A., Anderson W.F.
    Submitted (DEC-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).
  3. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine."
    Midwest Center for Structural Genomics (MCSG)
    Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
    Submitted (MAR-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS) OF 94-287.
  4. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with choline."
    Midwest Center for Structural Genomics (MCSG)
    Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
    Submitted (MAY-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 93-287.
  5. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with N,N-dimethylmethanamine."
    Midwest Center for Structural Genomics (MCSG)
    Halavaty A.S., Filippova E.V., Minasov G., Kiryukhina O., Shuvalova L., Endres M., Joachimiak A., Anderson W.F.
    Submitted (OCT-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 95-284.

Entry informationi

Entry nameiC7MT25_SACVD
AccessioniPrimary (citable) accession number: C7MT25
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: May 27, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.