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C7MT25

- C7MT25_SACVD

UniProt

C7MT25 - C7MT25_SACVD

Protein
Submitted name:

Transcriptional regulator

Gene

Svir_16270

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (13 Oct 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulationUniRule annotationSAAS annotation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciSVIR471857:GHAV-1622-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Transcriptional regulatorImported
    Gene namesi
    Ordered Locus Names:Svir_16270Imported
    OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
    Taxonomic identifieri471857 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharomonospora
    ProteomesiUP000000841: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi471857.Svir_16270.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4ICHX-ray1.95A/B1-287[»]
    4JNNX-ray2.35A94-287[»]
    4KWAX-ray1.80A/B93-287[»]
    4NELX-ray2.05A95-284[»]
    ProteinModelPortaliC7MT25.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation
    Contains HTH tetR-type DNA-binding domain.SAAS annotation

    Phylogenomic databases

    eggNOGiNOG73485.
    HOGENOMiHOG000253552.
    OMAiVNWLLNG.
    OrthoDBiEOG6ND0H6.

    Family and domain databases

    Gene3Di1.10.260.40. 1 hit.
    1.10.357.10. 1 hit.
    InterProiIPR009057. Homeodomain-like.
    IPR001647. HTH_TetR.
    IPR010982. Lambda_DNA-bd_dom.
    IPR015893. Tet_transcr_reg_TetR-like_C.
    IPR011075. Tet_transcr_reg_TetR-rel_C.
    [Graphical view]
    PfamiPF00440. TetR_N. 1 hit.
    [Graphical view]
    PRINTSiPR00455. HTHTETR.
    SUPFAMiSSF46689. SSF46689. 1 hit.
    SSF47413. SSF47413. 1 hit.
    SSF48498. SSF48498. 1 hit.
    PROSITEiPS50977. HTH_TETR_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C7MT25-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSESDELRRR VRGLIHSRPG AQREFAAAIG LDESKLSKSL NGTRRFSPHE    50
    LVRIAEHSGV TVNWLINGRD DARTVAAVPA PTARSRSAPA GEPQSEARRR 100
    ILETAWRLIA RRGYHNVRIH DIASELGTSN ATIHYHFPSK KDILLEALRR 150
    NVKLAFDRQV AELHTIADAR ERLVRLVELQ LPTPGLLRDE WSVWLQVWTE 200
    STLNPKIRDL YNDAYDRWYQ TIAMTIRTGQ KQGVFRDQDA DELATRLSAL 250
    IDGLGIQVLT GKRGCSVDHM RQHLNDFIEH NIVERRP 287
    Length:287
    Mass (Da):32,765
    Last modified:October 13, 2009 - v1
    Checksum:iB45814F5B8E3E3E2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001683 Genomic DNA. Translation: ACU96662.1.
    RefSeqiWP_015785975.1. NC_013159.1.
    YP_003133489.1. NC_013159.1.

    Genome annotation databases

    EnsemblBacteriaiACU96662; ACU96662; Svir_16270.
    GeneIDi8386960.
    KEGGisvi:Svir_16270.
    PATRICi23393676. VBISacVir111818_1624.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001683 Genomic DNA. Translation: ACU96662.1 .
    RefSeqi WP_015785975.1. NC_013159.1.
    YP_003133489.1. NC_013159.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4ICH X-ray 1.95 A/B 1-287 [» ]
    4JNN X-ray 2.35 A 94-287 [» ]
    4KWA X-ray 1.80 A/B 93-287 [» ]
    4NEL X-ray 2.05 A 95-284 [» ]
    ProteinModelPortali C7MT25.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 471857.Svir_16270.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACU96662 ; ACU96662 ; Svir_16270 .
    GeneIDi 8386960.
    KEGGi svi:Svir_16270.
    PATRICi 23393676. VBISacVir111818_1624.

    Phylogenomic databases

    eggNOGi NOG73485.
    HOGENOMi HOG000253552.
    OMAi VNWLLNG.
    OrthoDBi EOG6ND0H6.

    Enzyme and pathway databases

    BioCyci SVIR471857:GHAV-1622-MONOMER.

    Family and domain databases

    Gene3Di 1.10.260.40. 1 hit.
    1.10.357.10. 1 hit.
    InterProi IPR009057. Homeodomain-like.
    IPR001647. HTH_TetR.
    IPR010982. Lambda_DNA-bd_dom.
    IPR015893. Tet_transcr_reg_TetR-like_C.
    IPR011075. Tet_transcr_reg_TetR-rel_C.
    [Graphical view ]
    Pfami PF00440. TetR_N. 1 hit.
    [Graphical view ]
    PRINTSi PR00455. HTHTETR.
    SUPFAMi SSF46689. SSF46689. 1 hit.
    SSF47413. SSF47413. 1 hit.
    SSF48498. SSF48498. 1 hit.
    PROSITEi PS50977. HTH_TETR_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101Imported.
    2. "Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017."
      Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Jedrzejczak R., Joachimiak A., Anderson W.F.
      Submitted (DEC-2012) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).
    3. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine."
      Midwest Center for Structural Genomics (MCSG)
      Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
      Submitted (MAR-2013) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS) OF 94-287.
    4. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with choline."
      Midwest Center for Structural Genomics (MCSG)
      Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
      Submitted (MAY-2013) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 93-287.
    5. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with N,N-dimethylmethanamine."
      Midwest Center for Structural Genomics (MCSG)
      Halavaty A.S., Filippova E.V., Minasov G., Kiryukhina O., Shuvalova L., Endres M., Joachimiak A., Anderson W.F.
      Submitted (OCT-2013) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 95-284.

    Entry informationi

    Entry nameiC7MT25_SACVD
    AccessioniPrimary (citable) accession number: C7MT25
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 13, 2009
    Last sequence update: October 13, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3