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Protein
Submitted name:

Transcriptional regulator

Gene

Svir_16270

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi118 – 137H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1601-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulatorImported
Gene namesi
Ordered Locus Names:Svir_16270Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaeSaccharomonospora
Proteomesi
  • UP000000841 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_16270.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ICHX-ray1.95A/B1-287[»]
4JNNX-ray2.35A94-287[»]
4KWAX-ray1.80A/B93-287[»]
4NELX-ray2.05A95-284[»]
ProteinModelPortaliC7MT25.
SMRiC7MT25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini95 – 155HTH tetR-type DNA-bindingInterPro annotationAdd BLAST61

Phylogenomic databases

eggNOGiENOG4108NXC. Bacteria.
ENOG4110MJ7. LUCA.
HOGENOMiHOG000253552.
OMAiVNWLLNG.
OrthoDBiPOG091H02BD.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
PfamiView protein in Pfam
PF00440. TetR_N. 1 hit.
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiView protein in PROSITE
PS50977. HTH_TETR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

C7MT25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSESDELRRR VRGLIHSRPG AQREFAAAIG LDESKLSKSL NGTRRFSPHE
60 70 80 90 100
LVRIAEHSGV TVNWLINGRD DARTVAAVPA PTARSRSAPA GEPQSEARRR
110 120 130 140 150
ILETAWRLIA RRGYHNVRIH DIASELGTSN ATIHYHFPSK KDILLEALRR
160 170 180 190 200
NVKLAFDRQV AELHTIADAR ERLVRLVELQ LPTPGLLRDE WSVWLQVWTE
210 220 230 240 250
STLNPKIRDL YNDAYDRWYQ TIAMTIRTGQ KQGVFRDQDA DELATRLSAL
260 270 280
IDGLGIQVLT GKRGCSVDHM RQHLNDFIEH NIVERRP
Length:287
Mass (Da):32,765
Last modified:October 13, 2009 - v1
Checksum:iB45814F5B8E3E3E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96662.1.
RefSeqiWP_015785975.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU96662; ACU96662; Svir_16270.
KEGGisvi:Svir_16270.
PATRICi23393676. VBISacVir111818_1624.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96662.1.
RefSeqiWP_015785975.1. NC_013159.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4ICHX-ray1.95A/B1-287[»]
4JNNX-ray2.35A94-287[»]
4KWAX-ray1.80A/B93-287[»]
4NELX-ray2.05A95-284[»]
ProteinModelPortaliC7MT25.
SMRiC7MT25.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471857.Svir_16270.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU96662; ACU96662; Svir_16270.
KEGGisvi:Svir_16270.
PATRICi23393676. VBISacVir111818_1624.

Phylogenomic databases

eggNOGiENOG4108NXC. Bacteria.
ENOG4110MJ7. LUCA.
HOGENOMiHOG000253552.
OMAiVNWLLNG.
OrthoDBiPOG091H02BD.

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1601-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
PfamiView protein in Pfam
PF00440. TetR_N. 1 hit.
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiView protein in PROSITE
PS50977. HTH_TETR_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiC7MT25_SACVD
AccessioniPrimary (citable) accession number: C7MT25
Entry historyiIntegrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: February 15, 2017
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.