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C7MT25

- C7MT25_SACVD

UniProt

C7MT25 - C7MT25_SACVD

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Protein
Submitted name:

Transcriptional regulator

Gene

Svir_16270

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1622-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulatorImported
Gene namesi
Ordered Locus Names:Svir_16270Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharomonospora
ProteomesiUP000000841: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_16270.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4ICHX-ray1.95A/B1-287[»]
4JNNX-ray2.35A94-287[»]
4KWAX-ray1.80A/B93-287[»]
4NELX-ray2.05A95-284[»]
ProteinModelPortaliC7MT25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation
Contains HTH tetR-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiNOG73485.
HOGENOMiHOG000253552.
OMAiVNWLLNG.
OrthoDBiEOG6ND0H6.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7MT25-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSESDELRRR VRGLIHSRPG AQREFAAAIG LDESKLSKSL NGTRRFSPHE
60 70 80 90 100
LVRIAEHSGV TVNWLINGRD DARTVAAVPA PTARSRSAPA GEPQSEARRR
110 120 130 140 150
ILETAWRLIA RRGYHNVRIH DIASELGTSN ATIHYHFPSK KDILLEALRR
160 170 180 190 200
NVKLAFDRQV AELHTIADAR ERLVRLVELQ LPTPGLLRDE WSVWLQVWTE
210 220 230 240 250
STLNPKIRDL YNDAYDRWYQ TIAMTIRTGQ KQGVFRDQDA DELATRLSAL
260 270 280
IDGLGIQVLT GKRGCSVDHM RQHLNDFIEH NIVERRP
Length:287
Mass (Da):32,765
Last modified:October 13, 2009 - v1
Checksum:iB45814F5B8E3E3E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96662.1.
RefSeqiWP_015785975.1. NC_013159.1.
YP_003133489.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU96662; ACU96662; Svir_16270.
GeneIDi8386960.
KEGGisvi:Svir_16270.
PATRICi23393676. VBISacVir111818_1624.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96662.1 .
RefSeqi WP_015785975.1. NC_013159.1.
YP_003133489.1. NC_013159.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4ICH X-ray 1.95 A/B 1-287 [» ]
4JNN X-ray 2.35 A 94-287 [» ]
4KWA X-ray 1.80 A/B 93-287 [» ]
4NEL X-ray 2.05 A 95-284 [» ]
ProteinModelPortali C7MT25.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 471857.Svir_16270.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACU96662 ; ACU96662 ; Svir_16270 .
GeneIDi 8386960.
KEGGi svi:Svir_16270.
PATRICi 23393676. VBISacVir111818_1624.

Phylogenomic databases

eggNOGi NOG73485.
HOGENOMi HOG000253552.
OMAi VNWLLNG.
OrthoDBi EOG6ND0H6.

Enzyme and pathway databases

BioCyci SVIR471857:GHAV-1622-MONOMER.

Family and domain databases

Gene3Di 1.10.260.40. 1 hit.
1.10.357.10. 1 hit.
InterProi IPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR010982. Lambda_DNA-bd_dom.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view ]
Pfami PF00440. TetR_N. 1 hit.
[Graphical view ]
PRINTSi PR00455. HTHTETR.
SUPFAMi SSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEi PS50977. HTH_TETR_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101Imported.
  2. "Crystal structure of a putative TetR family transcriptional regulator from Saccharomonospora viridis DSM 43017."
    Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Jedrzejczak R., Joachimiak A., Anderson W.F.
    Submitted (DEC-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.95 ANGSTROMS).
  3. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with benzamidine."
    Midwest Center for Structural Genomics (MCSG)
    Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
    Submitted (MAR-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS) OF 94-287.
  4. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with choline."
    Midwest Center for Structural Genomics (MCSG)
    Filippova E.V., Minasov G., Shuvalova L., Kiryukhina O., Endres M., Joachimiak A., Anderson W.F.
    Submitted (MAY-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 93-287.
  5. "Crystal structure of a putative transcriptional regulator from Saccharomonospora viridis in complex with N,N-dimethylmethanamine."
    Midwest Center for Structural Genomics (MCSG)
    Halavaty A.S., Filippova E.V., Minasov G., Kiryukhina O., Shuvalova L., Endres M., Joachimiak A., Anderson W.F.
    Submitted (OCT-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.05 ANGSTROMS) OF 95-284.

Entry informationi

Entry nameiC7MT25_SACVD
AccessioniPrimary (citable) accession number: C7MT25
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: October 29, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3