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Protein
Submitted name:

tRNA/rRNA cytosine-C5-methylase

Gene

Svir_15690

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1543-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
tRNA/rRNA cytosine-C5-methylaseImported
Gene namesi
Ordered Locus Names:Svir_15690Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaPseudonocardialesPseudonocardiaceaeSaccharomonospora
Proteomesi
  • UP000000841 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_15690.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini196 – 483SAM_MT_RSMB_NOPInterPro annotationAdd BLAST288

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7MSK6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGDRRGRPR PQRGYRDRRG HRPAPRKQGP RRPPTRDPAR RAAFDALRAV
60 70 80 90 100
TERDAYANLI LPELLRQRRI TGRDAALATE LTYGTARATG LLDAIVARCV
110 120 130 140 150
DRKLDTVDPV VRDALRLGAY QLLRTRIPHH AAVASTVDLV REDAGSRVAG
160 170 180 190 200
FVNAVLRRVS EKDEQQWLAE LTADSSDPLA DLALRTSHPR WIARAFAEAL
210 220 230 240 250
GDKGDELRAA LEADDARPAV HLLAKPGQIS AEELAAITGG DVAPYSPYGV
260 270 280 290 300
HLPSGGGDLA ESEVIEEGLA TVQDEGSQLV AVASVNAPLG DAADGRDTRW
310 320 330 340 350
LDLCAGPGGK TVVLGCLAQT MGATVDAVEV AEHRARLVRE ATDGLPVTVH
360 370 380 390 400
VTDGRAPELD GDYDRVLVDA PCSGLGALRR RPEARWRKQP GDIAELTRLQ
410 420 430 440 450
TELLASAYRL VRPGGVVTYV VCSPHLAETE GVVMASAQRL GAELIDARVA
460 470 480
FPGVPHLGDG PTVQLWPHRH GTDAMFCAML RKPA
Length:484
Mass (Da):52,081
Last modified:October 13, 2009 - v1
Checksum:iB91C5A5533DBFC87
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96604.1.
RefSeqiWP_015785917.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU96604; ACU96604; Svir_15690.
KEGGisvi:Svir_15690.
PATRICi23393560. VBISacVir111818_1566.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU96604.1.
RefSeqiWP_015785917.1. NC_013159.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471857.Svir_15690.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU96604; ACU96604; Svir_15690.
KEGGisvi:Svir_15690.
PATRICi23393560. VBISacVir111818_1566.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-1543-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiC7MSK6_SACVD
AccessioniPrimary (citable) accession number: C7MSK6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: November 30, 2016
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.