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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

Svir_34930

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-3478-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Svir_34930Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharomonospora
ProteomesiUP000000841 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_34930.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiCVYSLRA.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

C7MQ32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTMTQPVDI EGRRLELSNL DKILYPEHGF TKGELIDYYA RVAPVLLPHV
60 70 80 90 100
RDRPLTLKRY PDGVEGKSFF EKNVSTHAPD WVRTVPIETP ESSHSRKSAD
110 120 130 140 150
FALVQDLSTL VWAANLASIE LHIPQWTVGP RGERRNPDLL VFDLDPGAPA
160 170 180 190 200
TIVDCCEVAL WLRDELTDDG LTAYPKTSGS KGLQLYAPVQ TRSDDRTNDY
210 220 230 240 250
AKRVAEKLER RHPRRVVSRM AKKLRVGKVL IDWSQNNPKK TTVAPYSLRA
260 270 280 290 300
RSAPTVSTPV TWSEVEACEN PAELGFVADE VLDRVDEHGD LFESLLTRAR

PSL
Length:303
Mass (Da):34,107
Last modified:October 13, 2009 - v1
Checksum:iE499BDA2B98093B9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU98455.1.
RefSeqiWP_015787765.1. NC_013159.1.
YP_003135282.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU98455; ACU98455; Svir_34930.
KEGGisvi:Svir_34930.
PATRICi23397568. VBISacVir111818_3557.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001683 Genomic DNA. Translation: ACU98455.1.
RefSeqiWP_015787765.1. NC_013159.1.
YP_003135282.1. NC_013159.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi471857.Svir_34930.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU98455; ACU98455; Svir_34930.
KEGGisvi:Svir_34930.
PATRICi23397568. VBISacVir111818_3557.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiCVYSLRA.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-3478-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101Imported.

Entry informationi

Entry nameiC7MQ32_SACVD
AccessioniPrimary (citable) accession number: C7MQ32
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: April 1, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.