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C7MQ31

- C7MQ31_SACVD

UniProt

C7MQ31 - C7MQ31_SACVD

Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Svir_34920

Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (13 Oct 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSVIR471857:GHAV-3477-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase D/DNA polymerase LigDImported
    Gene namesi
    Ordered Locus Names:Svir_34920Imported
    OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
    Taxonomic identifieri471857 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharomonospora
    ProteomesiUP000000841: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi471857.Svir_34920.

    Structurei

    3D structure databases

    ProteinModelPortaliC7MQ31.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiMVHRMDP.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    C7MQ31-1 [UniParc]FASTAAdd to Basket

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    MAPRLEQYRN KRRKGHTPEP IPSVTLASTE GHGDTFVVHE HHARNLHWDV    50
    RLERDGRLIS FAVPKGLPTE PGTVRLAVRT EDHPLEYSTF SGEIPKGEYG 100
    GGHMSIWDRG TYETLKWGES KVSIVLHGER VHGKYVFFRT RESDWSVVRS 150
    DPPDDPEWTP IPSLLKPMLA VTGSLPDPEE DSDWAYEFKW DGVRALARVE 200
    GGRVTLFSRR GDDITGIYPE LRALGEDLGS TQAWLDGEIV AFRDGRPHFA 250
    TLQGRINAGA QKARRLSQRS PVTYLVFDLL HLDGHSCMGL PYWQRRNLLE 300
    QLDITGEHWR TPPSFPGAGR AVTEAAAEQR LEGVVAKRLD SPYRPGERSV 350
    DWRKITELRT LEVVIGGWRQ GRGRRSDTFG SLLLGIPNDG RLQYIGQVGT 400
    GFDEDALHAL TSRLHRLERR TSPFSEALPK DRTSGAHWVS PRLVGEVAFK 450
    SWTDDGRLRA PTWRGLRPDR DPEELAR 477
    Length:477
    Mass (Da):53,953
    Last modified:October 13, 2009 - v1
    Checksum:i5F2D760EFACF6FAF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001683 Genomic DNA. Translation: ACU98454.1.
    RefSeqiYP_003135281.1. NC_013159.1.

    Genome annotation databases

    EnsemblBacteriaiACU98454; ACU98454; Svir_34920.
    GeneIDi8388814.
    KEGGisvi:Svir_34920.
    PATRICi23397566. VBISacVir111818_3556.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001683 Genomic DNA. Translation: ACU98454.1 .
    RefSeqi YP_003135281.1. NC_013159.1.

    3D structure databases

    ProteinModelPortali C7MQ31.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 471857.Svir_34920.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACU98454 ; ACU98454 ; Svir_34920 .
    GeneIDi 8388814.
    KEGGi svi:Svir_34920.
    PATRICi 23397566. VBISacVir111818_3556.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi MVHRMDP.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci SVIR471857:GHAV-3477-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101Imported.

    Entry informationi

    Entry nameiC7MQ31_SACVD
    AccessioniPrimary (citable) accession number: C7MQ31
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 13, 2009
    Last sequence update: October 13, 2009
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3