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C7MQ31

- C7MQ31_SACVD

UniProt

C7MQ31 - C7MQ31_SACVD

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Protein
Submitted name: DNA ligase D/DNA polymerase LigD
Gene
Svir_34920
Organism
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSVIR471857:GHAV-3477-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D/DNA polymerase LigDImported
Gene namesi
Ordered Locus Names:Svir_34920Imported
OrganismiSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)Imported
Taxonomic identifieri471857 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPseudonocardineaePseudonocardiaceaeSaccharomonospora
ProteomesiUP000000841: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi471857.Svir_34920.

Structurei

3D structure databases

ProteinModelPortaliC7MQ31.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiMVHRMDP.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

C7MQ31-1 [UniParc]FASTAAdd to Basket

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MAPRLEQYRN KRRKGHTPEP IPSVTLASTE GHGDTFVVHE HHARNLHWDV    50
RLERDGRLIS FAVPKGLPTE PGTVRLAVRT EDHPLEYSTF SGEIPKGEYG 100
GGHMSIWDRG TYETLKWGES KVSIVLHGER VHGKYVFFRT RESDWSVVRS 150
DPPDDPEWTP IPSLLKPMLA VTGSLPDPEE DSDWAYEFKW DGVRALARVE 200
GGRVTLFSRR GDDITGIYPE LRALGEDLGS TQAWLDGEIV AFRDGRPHFA 250
TLQGRINAGA QKARRLSQRS PVTYLVFDLL HLDGHSCMGL PYWQRRNLLE 300
QLDITGEHWR TPPSFPGAGR AVTEAAAEQR LEGVVAKRLD SPYRPGERSV 350
DWRKITELRT LEVVIGGWRQ GRGRRSDTFG SLLLGIPNDG RLQYIGQVGT 400
GFDEDALHAL TSRLHRLERR TSPFSEALPK DRTSGAHWVS PRLVGEVAFK 450
SWTDDGRLRA PTWRGLRPDR DPEELAR 477
Length:477
Mass (Da):53,953
Last modified:October 13, 2009 - v1
Checksum:i5F2D760EFACF6FAF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001683 Genomic DNA. Translation: ACU98454.1.
RefSeqiYP_003135281.1. NC_013159.1.

Genome annotation databases

EnsemblBacteriaiACU98454; ACU98454; Svir_34920.
GeneIDi8388814.
KEGGisvi:Svir_34920.
PATRICi23397566. VBISacVir111818_3556.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001683 Genomic DNA. Translation: ACU98454.1 .
RefSeqi YP_003135281.1. NC_013159.1.

3D structure databases

ProteinModelPortali C7MQ31.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 471857.Svir_34920.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACU98454 ; ACU98454 ; Svir_34920 .
GeneIDi 8388814.
KEGGi svi:Svir_34920.
PATRICi 23397566. VBISacVir111818_3556.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi MVHRMDP.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SVIR471857:GHAV-3477-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101.

Entry informationi

Entry nameiC7MQ31_SACVD
AccessioniPrimary (citable) accession number: C7MQ31
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: May 14, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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