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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Coch_0631

Organism
Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) (Bacteroides ochraceus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciCOCH521097:GH5D-649-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Coch_0631Imported
OrganismiCapnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) (Bacteroides ochraceus)Imported
Taxonomic identifieri521097 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCapnocytophaga
ProteomesiUP000006650: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi521097.Coch_0631.

Structurei

3D structure databases

ProteinModelPortaliC7M7T3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000031038.
KOiK01176.
OMAiTWITNEL.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

C7M7T3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYYIYLLAG LLAFSCDKKS NNDNPEPQNT VPLDLTKIDN GNRVMMQAFY
60 70 80 90 100
WDVTPLGEWW NTITPKLTEW KANGVDRIWL PPATKGASGG YSMGYDPSDY
110 120 130 140 150
FDFGEYNQHG TVKTRFGSRA ELENLISKAH ESGLQVIADI VIGHNNGGGK
160 170 180 190 200
EWNPYRNKET YTLFDETHGN ASGKFNRNYE CFHPNKYATS DEGADFYGEQ
210 220 230 240 250
DLSHKVPYVR EELWEKDNSM AKYYKNTMKF DGWRFDYVKS FGAWVVRDWL
260 270 280 290 300
KAVGGFAVGE LWDGNPETLK KWVDESGASA FDFACFYALE KALDRNKDMH
310 320 330 340 350
ELMTDTHPML RTLRTEKAVT FTANHDTEKD KIADNTIAPD KKLMAYAYIL
360 370 380 390 400
THSGYPCIFY SDYENEAFKA KLQKLMLINR SLAVGEEKFH LASNTEYVAS
410 420 430 440 450
RLGNEKSPGL VLFINNSTLP AKRTITTHWK NKTLIDYSGN SHLFFVTDSD
460
GNVTIQVPAN SYTVWSIGK
Length:469
Mass (Da):53,491
Last modified:October 13, 2009 - v1
Checksum:i01D22FEF614A4A35
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001632 Genomic DNA. Translation: ACU92189.1.
RefSeqiWP_015781906.1. NC_013162.1.
YP_003140750.1. NC_013162.1.

Genome annotation databases

EnsemblBacteriaiACU92189; ACU92189; Coch_0631.
GeneIDi8367048.
KEGGicoc:Coch_0631.
PATRICi21270014. VBICapOch61160_0620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001632 Genomic DNA. Translation: ACU92189.1.
RefSeqiWP_015781906.1. NC_013162.1.
YP_003140750.1. NC_013162.1.

3D structure databases

ProteinModelPortaliC7M7T3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi521097.Coch_0631.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU92189; ACU92189; Coch_0631.
GeneIDi8367048.
KEGGicoc:Coch_0631.
PATRICi21270014. VBICapOch61160_0620.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000031038.
KOiK01176.
OMAiTWITNEL.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciCOCH521097:GH5D-649-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845Imported.

Entry informationi

Entry nameiC7M7T3_CAPOD
AccessioniPrimary (citable) accession number: C7M7T3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: February 4, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.