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C7M6D2 (C7M6D2_CAPOD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP MF_00114
Short name=DERA HAMAP MF_00114
EC=4.1.2.4 HAMAP MF_00114
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP MF_00114
Phosphodeoxyriboaldolase HAMAP MF_00114
Gene names
Name:deoC HAMAP MF_00114
Ordered Locus Names:Coch_1452
OrganismCapnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) (Bacteroides ochraceus) [Complete proteome] [HAMAP]
Taxonomic identifier521097 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Capnocytophaga

Protein attributes

Sequence length220 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. HAMAP MF_00114 SAAS SAAS022979

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP MF_00114 SAAS SAAS022979

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP MF_00114 SAAS SAAS022979

Subcellular location

Cytoplasm By similarity HAMAP MF_00114 SAAS SAAS022979.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. HAMAP MF_00114

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1521Schiff-base intermediate with acetaldehyde By similarity HAMAP MF_00114
Active site1811 By similarity HAMAP MF_00114

Sequences

Sequence LengthMass (Da)Tools
C7M6D2 [UniParc].

Last modified October 13, 2009. Version 1.
Checksum: BF7B87BE4E69A6FE

FASTA22023,695
        10         20         30         40         50         60 
MELNKLIDHT LLKATATIAD IETLCKEAVE YDFYSVCVNS CYVTTAKKFL AGTDIKVCSV 

        70         80         90        100        110        120 
VGFPLGAMSA KAKYFETGEA LSDGADEIDM VLNVGLLKSG EVNKALDEII SLKRCVGENR 

       130        140        150        160        170        180 
VLKVILETCY LTDEEKRLAC RMALDAKADF VKTSTGFGSG GATLADVKLM KECVQDKAKI 

       190        200        210        220 
KASGGIRDYE TAMQYVNLGV QRIGTSNGIA ILKGEKGTGY

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001632 Genomic DNA. Translation: ACU92998.1.
RefSeqYP_003141559.1. NC_013162.1.

3D structure databases

ProteinModelPortalC7M6D2.
ModBaseSearch...

Protein-protein interaction databases

STRINGC7M6D2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID8367889.
GenomeReviewsGene locus Coch_1452 in contig CP001632_GR.
KEGGcoc:Coch_1452.
PATRIC21271670. VBICapOch61160_1430.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMACGFPSGK.

Family and domain databases

HAMAPMF_00114. DeoC_type1.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
IPR022979. Deoxyribose_phosphate_aldo_1.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01619.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. DeoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameC7M6D2_CAPOD
AccessionPrimary (citable) accession number: C7M6D2
Entry history
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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