C7M563 (C7M563_CAPOD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP/GTP-binding site EMBL ACU91763.1

Gene names

Ordered Locus Names:

Coch_0200

Organism

Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) (Bacteroides ochraceus) [Complete proteome] [HAMAP]

Taxonomic identifier

521097 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Capnocytophaga

Protein attributes

Sequence length	564 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACU91763.1
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 24	24	Potential EMBL ACU91763.1
	Chain	25 – 564	540	Potential EMBL ACU91763.1		PRO_5000506943

Sequences

	Sequence		Length	Mass (Da)
	C7M563 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: D468B455E64EDF63	FASTA	564	64,130
	10 20 30 40 50 60 MKTLSIALCT ALLCLASCKT AVTTSATPAQ MEVSSHKHIV LNKDTYHFYL NQTTDKELYI 70 80 90 100 110 120 SNHDQTNPKK VGLYLENLND VVIDGSNSEW LFHGTILPIV VKNCTNITLK NFSIDFATPH 130 140 150 160 170 180 LRQLHITEVD AKNNTVKAQL YPEGNYKIKD GKLFFTGEDY EETPFGGMIF RADKRLAYKR 190 200 210 220 230 240 ADVNFNPTKI TEIAPNEFRI EGIGAKPYLE KGERFVLRTY TRPTPAIFVT ESKNVKLENI 250 260 270 280 290 300 TVHNTQGMGL LAQLTENITL NRFRVALKEG TERYFTTQAD ATHFSACKGL IRSENGLYEG 310 320 330 340 350 360 MADDAINVHG TYLKVIARED NHTIKAQYMH PQSWGFLWGN VGDKVQFIAS KTMDVIGDKT 370 380 390 400 410 420 YRIQAIKAVD KPTEVGAKIF KITFDEILPT EVNPDTPCGV ENLTWTPEVI FKNNIVRNNR 430 440 450 460 470 480 ARGALFSTPK KVVCANNTFD HTHGTAILLC GDCNGWYETG ACHNVIIKNN HFINALTANY 490 500 510 520 530 540 QFTNAIISIY PEIPNLEAQQ KYFHSNITIE NNVFETFDEP ILYAKSVENL IYRNNKIIKN 550 560 QEFKPFHWNK ERFKLERTKN VKID

References

[1]

"Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845)." Mavrommatis K., Gronow S., Saunders E., Land M., Lapidus A., Copeland A., Glavina Del Rio T., Nolan M., Lucas S., Chen F., Tice H., Cheng J.F., Bruce D., Goodwin L., Pitluck S., Pati A., Ivanova N., Chen A. , Palaniappan K., Chain P., Hauser L., Chang Y.J., Jeffries C.D., Brettin T., Detter J.C., Han C., Bristow J., Goker M., Rohde M., Eisen J.A., Markowitz V., Kyrpides N.C., Klenk H.P., Hugenholtz P. Stand. Genomic Sci. 1:101-109(2009) [PubMed: 21304645] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001632 Genomic DNA. Translation: ACU91763.1.
RefSeq	YP_003140324.1. NC_013162.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	C7M563.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	8366605.
GenomeReviews	Gene locus Coch_0200 in contig CP001632_GR.
KEGG	coc:Coch_0200.
PATRIC	21269136. VBICapOch61160_0193.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	LTWTPEV.
ProtClustDB	CLSK823424.
Family and domain databases
InterPro	IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 2 hits.
SMART	SM00710. PbH1. 4 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C7M563_CAPOD

Accession

Primary (citable) accession number: C7M563

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	December 14, 2011
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)