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Protein
Submitted name:

Alpha-amylase

Gene

Coch_0985

Organism
Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / NCTC 12371 / VPI 2845) (Bacteroides ochraceus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciCOCH521097:GH5D-1005-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Ordered Locus Names:Coch_0985Imported
OrganismiCapnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / NCTC 12371 / VPI 2845) (Bacteroides ochraceus)Imported
Taxonomic identifieri521097 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCapnocytophaga
ProteomesiUP000006650 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi521097.Coch_0985.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 57 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1449.
HOGENOMiHOG000224113.
KOiK07405.
OMAiSDHFYYM.
OrthoDBiEOG6F81Q4.

Family and domain databases

Gene3Di3.20.110.10. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR004300. Glyco_hydro_57_N.
[Graphical view]
PfamiPF03065. Glyco_hydro_57. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

C7M3V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSICIYFQ IHHPERLRKY QFFDIGKKHN YFDNYANRSE LEDLAEHCYL
60 70 80 90 100
PANTLLLELI NKYKGKFKVA FSITGSAIDQ LEMHTPEVIR SFQELAQTGS
110 120 130 140 150
VEFLAETYSH SLASLSDDTD EFEQQVKRHT TAIKQLFGKK PVTFRNTSLI
160 170 180 190 200
YSDTIGERVA KLGFKTMLTD GAKHVLGWKS PNFVYKNAID KNLNLLLKNS
210 220 230 240 250
KLSDDIAIRF SDRNWSEYPL TSEKYISWVK NSLQDSEVLN LFMNYEVIGY
260 270 280 290 300
YNNAQSGIFD FLRYFITYMM EDDNYEFLLP KEVAKKHPAK DVLPVPYPIS
310 320 330 340 350
WTDEERDTTS WLGNELQKEA FRELFKIQPE VRKKKNADLI DDYTRLQASE
360 370 380 390 400
HFYFMRTKLF SGADYHKYRL PYDSPYEAFI NYMNVLSDFI ERCKPHEQEE
410
VQSTQVTKKK NQTRKK
Length:416
Mass (Da):49,067
Last modified:October 13, 2009 - v1
Checksum:iA42A3C3119CB62C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001632 Genomic DNA. Translation: ACU92540.1.
RefSeqiWP_015782204.1. NC_013162.1.

Genome annotation databases

EnsemblBacteriaiACU92540; ACU92540; Coch_0985.
KEGGicoc:Coch_0985.
PATRICi21270704. VBICapOch61160_0964.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001632 Genomic DNA. Translation: ACU92540.1.
RefSeqiWP_015782204.1. NC_013162.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi521097.Coch_0985.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACU92540; ACU92540; Coch_0985.
KEGGicoc:Coch_0985.
PATRICi21270704. VBICapOch61160_0964.

Phylogenomic databases

eggNOGiCOG1449.
HOGENOMiHOG000224113.
KOiK07405.
OMAiSDHFYYM.
OrthoDBiEOG6F81Q4.

Enzyme and pathway databases

BioCyciCOCH521097:GH5D-1005-MONOMER.

Family and domain databases

Gene3Di3.20.110.10. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR004300. Glyco_hydro_57_N.
[Graphical view]
PfamiPF03065. Glyco_hydro_57. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845Imported.

Entry informationi

Entry nameiC7M3V5_CAPOD
AccessioniPrimary (citable) accession number: C7M3V5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: July 22, 2015
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.