C7M2X1 (C7M2X1_ACIFD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S10 HAMAP-Rule MF_00508

Gene names

Name:	rpsJ HAMAP-Rule MF_00508
Ordered Locus Names:	Afer_0397

Organism

Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) [Complete proteome] [HAMAP]

Taxonomic identifier

525909 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Acidimicrobidae › Acidimicrobiales › Acidimicrobineae › Acidimicrobiaceae › Acidimicrobium › Acidimicrobium ferrooxidans

Protein attributes

Sequence length	108 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Involved in the binding of tRNA to the ribosomes By similarity. HAMAP-Rule MF_00508
Subunit structure	Part of the 30S ribosomal subunit By similarity. HAMAP-Rule MF_00508
Sequence similarities	Belongs to the ribosomal protein S10P family. HAMAP-Rule MF_00508

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_00508 EMBL ACU53365.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7M2X1 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: A2864767953D772B	FASTA	108	12,461
	10 20 30 40 50 60 MSDSSKQRIR VRLKGFDHEI LEASTRRIVD TVTRTQGKVV GPVPLPTDIH RYTVIRSPHK 70 80 90 100 YKDSREHFEM RVHKRLLDIV DHSAKTVDAL KRLELPAGVD IEIKIQNA

References

[1]

"Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP)." Clum A., Nolan M., Lang E., Glavina Del Rio T., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K. , Goeker M., Spring S., Land M., Hauser L., Chang Y.-J., Jeffries C.C., Chain P., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.-P., Lapidus A. Stand. Genomic Sci. 1:38-45(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 10331 / JCM 15462 / NBRC 103882 / ICP.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001631 Genomic DNA. Translation: ACU53365.1.
RefSeq	YP_003109038.1. NC_013124.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	525909.Afer_0397.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU53365; ACU53365; Afer_0397.
GeneID	8322456.
KEGG	afo:Afer_0397.
PATRIC	20640413. VBIAciFer34262_0416.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0051.
HOGENOM	HOG000270246.
KO	K02946.
OMA	QQKIRIK.
Enzyme and pathway databases
BioCyc	AFER525909:GHMR-410-MONOMER.
Family and domain databases
Gene3D	3.30.70.600. 1 hit.
HAMAP	MF_00508. Ribosomal_S10.
InterPro	IPR001848. Ribosomal_S10. [Graphical view]
PANTHER	PTHR11700. PTHR11700. 1 hit.
Pfam	PF00338. Ribosomal_S10. 1 hit. [Graphical view]
PRINTS	PR00971. RIBOSOMALS10.
SUPFAM	SSF54999. Ribosomal_S10. 1 hit.
TIGRFAMs	TIGR01049. rpsJ_bact. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C7M2X1_ACIFD

Accession

Primary (citable) accession number: C7M2X1

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)