C7LUP4 (C7LUP4_DESBD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
dTDP-glucose 4,6-dehydratase RuleBase RU004473
EC=4.2.1.46 RuleBase RU004473

Gene names

Ordered Locus Names:

Dbac_2884

Organism

Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) (Desulfovibrio baculatus) [Complete proteome] [HAMAP] EMBL ACU90959.1

Taxonomic identifier

525897 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfovibrionales › Desulfomicrobiaceae › Desulfomicrobium › Desulfovibrio baculatus

Protein attributes

Sequence length	341 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	dTDP-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O. RuleBase RU004473
Cofactor	NAD By similarity. RuleBase RU004473
Sequence similarities	Belongs to the sugar epimerase family. dTDP-glucose dehydratase subfamily. RuleBase RU004473

Ontologies

Keywords
Molecular function	Lyase RuleBase RU004473
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	nucleotide-sugar metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	coenzyme binding Inferred from electronic annotation. Source: InterPro dTDP-glucose 4,6-dehydratase activity Inferred from electronic annotation. Source: EC nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	C7LUP4 [UniParc]. Last modified October 13, 2009. Version 1. Checksum: 45C7A5C254FEB672	FASTA	341	38,548
	10 20 30 40 50 60 MHLLVTGGCG FIGSNFIQHM LASHEDVVIV NLDKLTYAGN RRNLAEEEAL HLGRRYHFVH 70 80 90 100 110 120 GDICDQELVP ELMKRFVFDA VLNFAAESHV DRSISDPFPF VTTNVLGTQN LLEAARRAEI 130 140 150 160 170 180 PRFVHISTDE VYGTLGPTGQ FTEDTPLAPN SPYSASKASS DLLARAYFHT YGMPVMVTRC 190 200 210 220 230 240 SNNYGPYQFP EKLIPLVYLK ASRSEPIPVY GDGQNVRDWI YVMDHCRGVE ATLFKGQPGA 250 260 270 280 290 300 VYNFGGDAER TNLEVVRLIL RLTGKSEDLI THVTDRPGHD RRYAMAFARS TADLGWTPQH 310 320 330 340 SFEDGMARTL AWYKANEAWL DEVQSGAYRQ FMDNWYRTRQ A

References

[1]

"Complete genome sequence of Desulfomicrobium baculatum type strain (X)." Copeland A., Spring S., Goker M., Schneider S., Lapidus A., Del Rio T.G., Tice H., Cheng J.F., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S., Ivanova N., Mavrommatis K., Ovchinnikova G., Pati A., Chen A. , Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.C., Meincke L., Sims D., Brettin T., Detter J.C., Han C., Chain P., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P., Lucas S. Stand. Genomic Sci. 1:29-37(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 4028 / VKM B-1378.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001629 Genomic DNA. Translation: ACU90959.1.
RefSeq	YP_003159375.1. NC_013173.1.
3D structure databases
ProteinModelPortal	C7LUP4.
ModBase	Search...
Protein-protein interaction databases
STRING	525897.Dbac_2884.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACU90959; ACU90959; Dbac_2884.
GeneID	8378576.
KEGG	dba:Dbac_2884.
PATRIC	21708240. VBIDesBac69216_2937.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1088.
HOGENOM	HOG000168006.
KO	K01710.
OMA	RADGERY.
Enzyme and pathway databases
BioCyc	DBAC525897:GI50-2945-MONOMER.
Family and domain databases
Gene3D	3.40.50.720. 1 hit.
InterPro	IPR005888. dTDP_Gluc_deHydtase. IPR001509. Epimerase_deHydtase. IPR016040. NAD(P)-bd_dom. [Graphical view]
PANTHER	PTHR10366:SF41. PTHR10366:SF41. 1 hit.
Pfam	PF01370. Epimerase. 1 hit. [Graphical view]
TIGRFAMs	TIGR01181. dTDP_gluc_dehyt. 1 hit.
ProtoNet	Search...

Entry information

Entry name

C7LUP4_DESBD

Accession

Primary (citable) accession number: C7LUP4

Entry history

Integrated into UniProtKB/TrEMBL:	October 13, 2009
Last sequence update:	October 13, 2009
Last modified:	May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)