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C7JAU4 (C7JAU4_ACEP3) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length244 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS002381

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS002381

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
C7JAU4 [UniParc].

Last modified October 13, 2009. Version 1.
Checksum: 079E78FB63A6FD3F

FASTA24426,038
        10         20         30         40         50         60 
MRPSGRQPDQ MRPITIETGF AHHAEGSALI RVGGTEVLCT ASIENRVPPF LRGKGTGWVT 

        70         80         90        100        110        120 
AEYGMLPRAT HTRGNREAAK GKQSGRTQEI QRLIGRSLRA VTDLDALGEM SITLDCDVLN 

       130        140        150        160        170        180 
ADGGTRCASI TGAWVALRLA LGKLVATNVL PRLPLRGQVA AVSCGLTTEG AVLDLDYVED 

       190        200        210        220        230        240 
SSASADTNFV LTADRRIVEI QGTAESAPFT EDAFDNLFAL ARKGVTELFE AQMAAVEAAE 


KKRA 

« Hide

References

[1]"Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus."
Azuma Y., Hosoyama A., Matsutani M., Furuya N., Horikawa H., Harada T., Hirakawa H., Kuhara S., Matsushita K., Fujita N., Shirai M.
Nucleic Acids Res. 37:5768-5783(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 3283 / LMG 1513 / CCTM 1153.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP011121 Genomic DNA. Translation: BAH98220.1.
RefSeqYP_003186600.1. NC_013209.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING634452.APA01_00630.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH98220; BAH98220; APA01_00630.
GeneID8434359.
KEGGapt:APA01_00630.
PATRIC20630354. VBIAcePas139226_0064.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229516.
KOK00989.
OMAKGQGWVT.
OrthoDBEOG6CZQQP.
ProtClustDBCLSK2541425.

Enzyme and pathway databases

BioCycAPAS634452:GI0T-63-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameC7JAU4_ACEP3
AccessionPrimary (citable) accession number: C7JAU4
Entry history
Integrated into UniProtKB/TrEMBL: October 13, 2009
Last sequence update: October 13, 2009
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)